Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47798 | Canola | plasma membrane | 35.81 | 45.41 |
| Bra039568.1-P | Field mustard | extracellular, golgi | 34.51 | 45.04 |
| AT4G00315.1 | Thale cress | cytosol | 36.18 | 44.22 |
| Bra039567.1-P | Field mustard | cytosol, golgi, mitochondrion, plastid | 29.5 | 41.41 |
| AT1G55660.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 37.48 | 41.06 |
| AT5G56690.1 | Thale cress | endoplasmic reticulum | 30.43 | 40.8 |
| AT5G60610.1 | Thale cress | cytosol | 28.76 | 39.95 |
| AT5G56700.2 | Thale cress | cytosol | 26.16 | 39.17 |
| AT2G26860.2 | Thale cress | cytosol | 28.2 | 37.53 |
| AT4G15075.1 | Thale cress | cytosol | 11.13 | 35.71 |
| AT5G62970.1 | Thale cress | cytosol | 28.76 | 34.52 |
| AT1G19410.1 | Thale cress | cytosol | 25.79 | 31.95 |
| AT5G56410.1 | Thale cress | cytosol | 28.2 | 30.22 |
| CDY22940 | Canola | plasma membrane | 39.89 | 25.41 |
| AT5G11370.1 | Thale cress | cytosol, extracellular | 14.29 | 24.76 |
| AT5G38580.1 | Thale cress | cytosol | 5.38 | 17.26 |
| AT4G10420.1 | Thale cress | extracellular, golgi, nucleus | 9.46 | 15.84 |
| AT5G38565.1 | Thale cress | cytosol, peroxisome, plastid | 9.65 | 14.9 |
| AT4G10410.1 | Thale cress | cytosol, plasma membrane, plastid | 6.86 | 14.07 |
| AT3G54910.2 | Thale cress | cytosol | 9.28 | 13.4 |
| AT5G38590.2 | Thale cress | cytosol | 9.28 | 12.2 |
| AT5G38570.1 | Thale cress | cytosol, nucleus, plasma membrane | 8.53 | 12.14 |
| AT4G10400.1 | Thale cress | cytosol | 8.91 | 11.74 |
| AT4G09920.1 | Thale cress | cytosol, plasma membrane, plastid | 5.94 | 10.13 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:827169 | ArrayExpress:AT4G15060 | EnsemblPlantsGene:AT4G15060 | RefSeq:AT4G15060 |
| TAIR:AT4G15060 | RefSeq:AT4G15060-TAIR-G | EnsemblPlants:AT4G15060.1 | TAIR:AT4G15060.1 | Unigene:At.54327 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | PFAM:PF00646 | PFAM:PF07723 | PFAM:PF08387 |
| PO:PO:0000037 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0007115 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR32212 |
| PANTHER:PTHR32212:SF173 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0001E92EE2 | : |
Description
CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Re /.../omains containing protein (TAIR:AT1G55660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G15060]
Coordinates
chr4:+:8599035..8601761
Molecular Weight (calculated)
62518.0 Da
IEP (calculated)
7.791
GRAVY (calculated)
-0.159
Length
539 amino acids
Sequence
(BLAST)
(BLAST)
001: MPNLEEADIS STYPDIYKFV RSVTSVKRLS LCIRVNAEEA LYPDGIVFNQ LENLKLCPCD SNWSKLFVRL LKYSPNLREL EVSLNEGHTK CCVDPQVSLE
101: NQLNFVPECL LSSLQTFKWT GIHGSLKVMD LAKYILRNAR CLKTATILFQ PALETERETM IQELLLSFRD MDKISRLPDD LLVKVLLFLP TKIAVSTSIL
201: SKRWEFLWMW LPKLEYHNTN YSASEEQRLR SFINLNLQLH RAPIIESLRL KFSLGRSIKP QNIKQWIIIA VFRCVRELSI NLFPLYCIEN PAKLPSSLYI
301: SKSLVILKLK DQILVDVPRM AYLPSLKYLL LKRVTYKDSN SLHQLLSSCP VLKNLVVERD EYNHDETLSI TVSSLQRLTL KISRGGSFDE LVINTPSLKY
401: FKLTDYLGEC ETELDDDSYS YVFKDMPKLE EAHIDSTYPD IGKFVRSITS VKRLSLCVKV NAEEDSPNLR ELEIKLNKDH KASFDDPACL ENQLNYVVQS
501: SIPSLERFTW TWIYGSQNEI DYLEKLKKRL LLTNWQNLV
101: NQLNFVPECL LSSLQTFKWT GIHGSLKVMD LAKYILRNAR CLKTATILFQ PALETERETM IQELLLSFRD MDKISRLPDD LLVKVLLFLP TKIAVSTSIL
201: SKRWEFLWMW LPKLEYHNTN YSASEEQRLR SFINLNLQLH RAPIIESLRL KFSLGRSIKP QNIKQWIIIA VFRCVRELSI NLFPLYCIEN PAKLPSSLYI
301: SKSLVILKLK DQILVDVPRM AYLPSLKYLL LKRVTYKDSN SLHQLLSSCP VLKNLVVERD EYNHDETLSI TVSSLQRLTL KISRGGSFDE LVINTPSLKY
401: FKLTDYLGEC ETELDDDSYS YVFKDMPKLE EAHIDSTYPD IGKFVRSITS VKRLSLCVKV NAEEDSPNLR ELEIKLNKDH KASFDDPACL ENQLNYVVQS
501: SIPSLERFTW TWIYGSQNEI DYLEKLKKRL LLTNWQNLV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.