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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 2
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plasma membrane, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT5G60610.1 Thale cress cytosol 34.94 39.18
AT5G56690.1 Thale cress endoplasmic reticulum 33.79 36.57
AT5G62970.1 Thale cress cytosol 37.24 36.08
AT5G56700.2 Thale cress cytosol 29.2 35.28
AT2G26860.2 Thale cress cytosol 31.95 34.32
AT4G00315.1 Thale cress cytosol 34.25 33.79
AT5G56410.1 Thale cress cytosol 37.01 32.01
AT4G15075.1 Thale cress cytosol 12.18 31.55
AT5G38580.1 Thale cress cytosol 11.95 30.95
AT1G55660.1 Thale cress endoplasmic reticulum, extracellular, plasma membrane 34.71 30.69
AT5G11370.1 Thale cress cytosol, extracellular 20.69 28.94
AT4G15060.1 Thale cress cytosol 31.95 25.79
AT4G10420.1 Thale cress extracellular, golgi, nucleus 14.94 20.19
AT3G54910.2 Thale cress cytosol 15.4 17.96
AT5G38570.1 Thale cress cytosol, nucleus, plasma membrane 15.4 17.68
AT5G38590.2 Thale cress cytosol 16.55 17.56
AT5G38565.1 Thale cress cytosol, peroxisome, plastid 13.33 16.62
AT4G10410.1 Thale cress cytosol, plasma membrane, plastid 9.66 15.97
AT4G10400.1 Thale cress cytosol 14.48 15.4
AT4G09920.1 Thale cress cytosol, plasma membrane, plastid 6.44 8.86
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1EntrezGene:838524ProteinID:AEE29850.1ArrayExpress:AT1G19410EnsemblPlantsGene:AT1G19410
RefSeq:AT1G19410TAIR:AT1G19410RefSeq:AT1G19410-TAIR-GEnsemblPlants:AT1G19410.1TAIR:AT1G19410.1Unigene:At.51679
UniProt:F4HP61InterPro:FBDGO:GO:0008150InterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rpt_2
RefSeq:NP_173374.1PFAM:PF07723PFAM:PF08387PANTHER:PTHR32212PANTHER:PTHR32212:SF173SUPFAM:SSF52047
UniParc:UPI0000162E0FSEG:seg::::
Description
FBD / Leucine Rich Repeat domains containing protein [Source:UniProtKB/TrEMBL;Acc:F4HP61]
Coordinates
chr1:-:6714492..6716439
Molecular Weight (calculated)
49306.5 Da
IEP (calculated)
5.913
GRAVY (calculated)
0.157
Length
435 amino acids
Sequence
(BLAST)
001: MEKINTDDLL VKILSFLPTK VAVTTSILSK RGSFFGCGTL PLHRVPVLES LPLKFSTLPF QPEDIKLCVE AAVSHCVREL FIDYYPHPYK FATLPFCVYT
101: CKSLETLALS YAILMVVPRM ACLPSLKNLL LQGVRYVDES FQLLDESHTV CFPSLKSLHL KEVISSDERY LRSLLANCPV LEELVMELDE YDTLGAVHII
201: VPSLKSLSLD IDCDRSSNVV EIVAPSLEYI KLNDHSDNKF LIENMPKLEE AYIDANIFEY EKFLGAFTSV KRLRASPSIV SGRISGDGLN LCLMLQRSEA
301: RNVSAICFNQ LESLKICTCK PYWSIILLRL LKGSPNLKVL ELTDNKMPLC FKDPLVCWDQ VTPVPECLLT SLETFKWTDL PPRQEARDMR TVLVLKNEMV
401: KLLDDKIVRS ERKEHIIFFF AITVSDIYVS SSSSP
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.