Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- mitochondrion 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G15075.1 | Thale cress | cytosol | 18.33 | 33.93 |
| AT5G62970.1 | Thale cress | cytosol | 42.77 | 29.62 |
| AT5G56410.1 | Thale cress | cytosol | 44.37 | 27.44 |
| AT5G38580.1 | Thale cress | cytosol | 14.79 | 27.38 |
| AT5G56700.2 | Thale cress | cytosol | 30.23 | 26.11 |
| AT4G00315.1 | Thale cress | cytosol | 35.69 | 25.17 |
| AT5G60610.1 | Thale cress | cytosol | 28.94 | 23.2 |
| AT2G26860.2 | Thale cress | cytosol | 29.26 | 22.47 |
| AT1G55660.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 35.37 | 22.36 |
| AT5G56690.1 | Thale cress | endoplasmic reticulum | 28.62 | 22.14 |
| AT1G19410.1 | Thale cress | cytosol | 28.94 | 20.69 |
| AT4G10420.1 | Thale cress | extracellular, golgi, nucleus | 18.01 | 17.39 |
| AT5G38590.2 | Thale cress | cytosol | 19.61 | 14.88 |
| AT3G54910.2 | Thale cress | cytosol | 17.68 | 14.75 |
| AT5G38570.1 | Thale cress | cytosol, nucleus, plasma membrane | 17.68 | 14.51 |
| AT4G15060.1 | Thale cress | cytosol | 24.76 | 14.29 |
| AT4G10400.1 | Thale cress | cytosol | 18.65 | 14.18 |
| AT5G38565.1 | Thale cress | cytosol, peroxisome, plastid | 14.15 | 12.61 |
| AT4G10410.1 | Thale cress | cytosol, plasma membrane, plastid | 9.97 | 11.79 |
| AT4G09920.1 | Thale cress | cytosol, plasma membrane, plastid | 8.68 | 8.54 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:831008 | ProteinID:AED91668.1 | ArrayExpress:AT5G11370 | EnsemblPlantsGene:AT5G11370 |
| RefSeq:AT5G11370 | TAIR:AT5G11370 | RefSeq:AT5G11370-TAIR-G | EnsemblPlants:AT5G11370.1 | TAIR:AT5G11370.1 | Unigene:At.54816 |
| ProteinID:CAB96672.1 | InterPro:FBD | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009506 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | RefSeq:NP_196698.1 | PFAM:PF07723 | PFAM:PF08387 | PANTHER:PTHR32212 |
| PANTHER:PTHR32212:SF173 | UniProt:Q9LFM0 | SMART:SM00579 | SUPFAM:SSF52047 | UniParc:UPI00000A3B12 | SEG:seg |
Description
FBD / Leucine Rich Repeat domains containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LFM0]
Coordinates
chr5:+:3627849..3629717
Molecular Weight (calculated)
35343.4 Da
IEP (calculated)
8.095
GRAVY (calculated)
0.014
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKSKRMELF IDRNLPACVS SLSVHLINLN VSNFGQTKLA YNDHIFGHLV HGSRISGFGL VCQVVWSLKL KDEIFVDVPR MVCLPSLKTL HLKGVMYVDE
101: GSLQRLLSNC SLLEELVVER CNGANMRKFA VIIPQSSLSY LIVNMPKLEE ADIARGSHDV KKLLKSISSV KRLSLYLEVN NNEDLYGDDI VFNELEHLKF
201: RISRAVPRSM ANVVGDSMDT LFCWKQMIDV PQCLLSSLQT FKWRTYFPTE EEKGLATYIL AKSCRLKTAR ILIVSKLDPQ KELEMKNELL SSCGSTTCNL
301: DLVFKQFNDL L
101: GSLQRLLSNC SLLEELVVER CNGANMRKFA VIIPQSSLSY LIVNMPKLEE ADIARGSHDV KKLLKSISSV KRLSLYLEVN NNEDLYGDDI VFNELEHLKF
201: RISRAVPRSM ANVVGDSMDT LFCWKQMIDV PQCLLSSLQT FKWRTYFPTE EEKGLATYIL AKSCRLKTAR ILIVSKLDPQ KELEMKNELL SSCGSTTCNL
301: DLVFKQFNDL L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.