Skip to main content
crop-pal logo
Thale cress
Search for another protein from :
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, golgi, nucleus

Predictor Summary:
  • nucleus 2
  • extracellular 2
  • golgi 2
  • plasma membrane 1
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, golgi, nucleus
Any Predictor:extracellular, golgi, nucleus
BaCelLo:nucleus
MultiLoc:extracellular
PProwler:secretory
WoLF PSORT:nucleus
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT4G10400.1 Thale cress cytosol 71.43 56.23
AT5G38580.1 Thale cress cytosol 28.26 54.17
AT4G10410.1 Thale cress cytosol, plasma membrane, plastid 43.79 53.61
AT4G09920.1 Thale cress cytosol, plasma membrane, plastid 45.34 46.2
AT3G54910.2 Thale cress cytosol 53.42 46.11
AT5G38590.2 Thale cress cytosol 50.0 39.27
AT5G38570.1 Thale cress cytosol, nucleus, plasma membrane 45.96 39.05
Bra029225.1-P Field mustard cytosol 32.3 36.11
AT5G38565.1 Thale cress cytosol, peroxisome, plastid 38.51 35.53
AT4G15075.1 Thale cress cytosol 18.01 34.52
CDY64738 Canola extracellular, nucleus, peroxisome 27.95 28.94
AT5G56700.2 Thale cress cytosol 22.98 20.56
AT5G11370.1 Thale cress cytosol, extracellular 17.39 18.01
AT5G62970.1 Thale cress cytosol 24.22 17.37
AT2G26860.2 Thale cress cytosol 21.12 16.79
AT5G60610.1 Thale cress cytosol 19.57 16.24
AT4G00315.1 Thale cress cytosol 22.05 16.1
AT1G55660.1 Thale cress endoplasmic reticulum, extracellular, plasma membrane 23.29 15.24
AT1G19410.1 Thale cress cytosol 20.19 14.94
AT5G56690.1 Thale cress endoplasmic reticulum 18.01 14.43
AT5G56410.1 Thale cress cytosol 22.36 14.31
AT4G15060.1 Thale cress cytosol 15.84 9.46
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1EntrezGene:826634ProteinID:AEE82879.1ArrayExpress:AT4G10420EnsemblPlantsGene:AT4G10420
RefSeq:AT4G10420TAIR:AT4G10420RefSeq:AT4G10420-TAIR-GEnsemblPlants:AT4G10420.1TAIR:AT4G10420.1UniProt:F4JLN7
InterPro:FBDGO:GO:0005575GO:GO:0008150GO:GO:0016020GO:GO:0016021InterPro:IPR032675
InterPro:LRR_dom_sfInterPro:Leu-rich_rpt_2RefSeq:NP_192780.4PFAM:PF07723PFAM:PF08387PO:PO:0000037
PO:PO:0000293PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007611
PO:PO:0007616PO:PO:0009005PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009052PO:PO:0025022PANTHER:PTHR32212
PANTHER:PTHR32212:SF173SMART:SM00579SUPFAM:SSF52058UniParc:UPI0001A7B0B7::
Description
FBD / Leucine Rich Repeat domains containing protein [Source:UniProtKB/TrEMBL;Acc:F4JLN7]
Coordinates
chr4:-:6452811..6454209
Molecular Weight (calculated)
37155.3 Da
IEP (calculated)
6.499
GRAVY (calculated)
-0.018
Length
322 amino acids
Sequence
(BLAST)
001: MWVVVVLSRY VRELEIYSSC YQDKQNILPS SLYTCKSLVI LKLNGGILMD VPRMVCLPSL KTLVLKGVNY FKQESLQRLL SNCPVLEDLV VNLCHHDNMG
101: KFIVIVPSLQ RLSLYIGYKR VLDEFVIDTP SLEYFKLVDR NYDSHPCLIE NMPKLTEAYV DVRSTDLQSL IGSITSVKRL IISSKAMFGD GYIFNRLERL
201: TLHVLEENPS NLLSQFLKDS PNLQELEYFS ELDDSYENMR MFPWNQPSIV PECLLSSLQK FTWSQYLGRT QDRDIAVYIL KNACCLRNAT IDSYTCLVPE
301: LKMIKELTRS SRASTTCELN FS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.