Factsheet for Bra029225.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra025795.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10400.1	Bra012213.1-P	AT1G20140.1	21798944
AT4G10400.1	Bra012214.1-P	AT1G20140.1	21798944
AT4G10400.1	Bra012216.1-P	AT1G20140.1	21798944
AT4G10400.1	Bra025795.1-P	AT1G20140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64738	Canola	extracellular, nucleus, peroxisome	67.71	62.7
AT4G10410.1	Thale cress	cytosol, plasma membrane, plastid	34.03	37.26
Bra023058.1-P	Field mustard	cytosol	44.79	34.58
Bra007169.1-P	Field mustard	extracellular	34.38	32.78
Bra007168.1-P	Field mustard	cytosol, extracellular, nucleus	33.33	32.76
Bra028194.1-P	Field mustard	cytosol	32.99	32.31
AT4G10420.1	Thale cress	extracellular, golgi, nucleus	36.11	32.3
Bra035845.1-P	Field mustard	cytosol, extracellular, nucleus	28.47	32.03
AT4G09920.1	Thale cress	cytosol, plasma membrane, plastid	34.72	31.65
Bra007115.1-P	Field mustard	extracellular	31.94	31.29
Bra007113.1-P	Field mustard	cytosol, extracellular, plasma membrane	34.72	31.25
AT4G10400.1	Thale cress	cytosol	43.4	30.56
Bra007114.1-P	Field mustard	extracellular, plasma membrane	42.36	29.4
Bra007112.1-P	Field mustard	extracellular, golgi	37.85	28.24
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	38.19	26.38
Bra032036.1-P	Field mustard	cytosol	14.58	23.2
Bra040954.1-P	Field mustard	cytosol, nucleus, plastid	12.85	21.89
Bra002819.1-P	Field mustard	extracellular, plasma membrane	44.79	16.95
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	20.14	15.1
Bra022582.1-P	Field mustard	cytosol	19.79	14.32
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	17.71	12.32
Bra039568.1-P	Field mustard	extracellular, golgi	17.01	11.86
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	18.06	10.66

Protein Annotations

EnsemblPlants:Bra029225.1	EnsemblPlants:Bra029225.1-P	EnsemblPlantsGene:Bra029225	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF07723	SUPFAM:SSF52047	UniParc:UPI0002545F76
UniProt:M4EKA8	MapMan:35.1	:	:	:	:

Description

AT3G54910 (E=8e-046) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G10400.2); Has 661 Blast hits to 647 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 657; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA02:-:26454258..26455421

Molecular Weight (calculated)

32968.9 Da

IEP (calculated)

6.743

GRAVY (calculated)

0.223

Length

288 amino acids

Sequence
(BLAST)

001: MWLPRLEYIS ICFERESFKC MSDYDSPLRR FLDRSMPLHK ASVIESFRLD LAFAGCKPED IKLWIFIAVS RFLRELDGNI LLDVPRMVGL PSLKTLQIQS
101: VKLLDGESFR KILSICPVLE NLLVKLYGGY VNMGMINVGI PSLLRLSLQI PYDGLLDGLV IDTPSLKYLK LEDYDKEYLP SCLIEDLPQL EKAYLDVNYR
201: DVERLIASIT SVKRLTLALE AIYRGKFVFN QLEHLRLCVG TNCASSLLVR LLEDSPNLRE LDLFEMVSKL LGVFTRLILP GRVCSHLS

Best Arabidopsis Sequence Match ( AT3G54910.1 )
(BLAST)

001: MWLPKLKYGH RDSSECKRLE CFLDKNLPLH RAPVIESFRL YLIDSKCTPE NIKMWVVIAV SHCLRELEVI YSSYPEKPNI LPSNLYTCKS LVILELCGEI
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD

Arabidopsis Description

At3g54910 [Source:UniProtKB/TrEMBL;Acc:Q501B7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.