Factsheet for Bra035845.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

plastid 1
extracellular 2
nucleus 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16725	Canola	cytosol, extracellular, nucleus	100.0	100.0
CDY48142	Canola	cytosol	69.92	90.86
Bra007115.1-P	Field mustard	extracellular	37.89	32.99
Bra007113.1-P	Field mustard	cytosol, extracellular, plasma membrane	40.23	32.19
Bra007169.1-P	Field mustard	extracellular	35.55	30.13
Bra028194.1-P	Field mustard	cytosol	33.98	29.59
Bra007168.1-P	Field mustard	cytosol, extracellular, nucleus	33.59	29.35
Bra023058.1-P	Field mustard	cytosol	42.19	28.95
Bra029225.1-P	Field mustard	cytosol	32.03	28.47
Bra007114.1-P	Field mustard	extracellular, plasma membrane	41.8	25.78
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	39.84	24.46
Bra007112.1-P	Field mustard	extracellular, golgi	35.94	23.83
Bra032036.1-P	Field mustard	cytosol	13.67	19.34
Bra002819.1-P	Field mustard	extracellular, plasma membrane	44.14	14.85
Bra040954.1-P	Field mustard	cytosol, nucleus, plastid	8.59	13.02
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	17.97	11.98
Bra039568.1-P	Field mustard	extracellular, golgi	19.14	11.86
Bra022582.1-P	Field mustard	cytosol	17.97	11.56
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	17.19	10.63
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	16.41	8.61

Protein Annotations

EnsemblPlants:Bra035845.1	EnsemblPlants:Bra035845.1-P	EnsemblPlantsGene:Bra035845	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675
InterPro:LRR_dom_sf	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF08387	SUPFAM:SSF52047	UniParc:UPI0002541A58
UniProt:M4F445	MapMan:35.1	:	:	:	:

Description

AT4G10400 (E=2e-037) | F-box family protein

Coordinates

chrA09:-:3332384..3333588

Molecular Weight (calculated)

29966.3 Da

IEP (calculated)

5.449

GRAVY (calculated)

-0.227

Length

256 amino acids

Sequence
(BLAST)

001: MWLATALSRN LCELFLINEY SNEKPNILPS RLYTCKSLVI LKLRGEIRPD VPRLSCLPSL KTLELLLDKY FQGGPLRRFL FICPVLENLL MNCGWDDYDK
101: GLITVTVPSL QRLTLYLHSQ TEGGMLPRGL VIDSPSLKYL KLRDRHQWSR PGFSIETMPD LEEAYVNVQY WDSSNLLARL LEDSPNVRVL DIFEIDHDDR
201: DYEELISTVR TVRESVLSNL RTFNWSRYFE RRPQEMDLAV YILGEKWSLK DCNNLV

Best Arabidopsis Sequence Match ( AT4G10400.1 )
(BLAST)

001: MDRISGLPDE VLVKILSFVP TKVAVSTSIL SKRWEFLWMW LTKLKFGSKR YSESEFKRLQ CFLDRNLPLH RAPVIESFRL VLSDSHFKPE DIRMWVVVAV
101: SRYIRELKIY SSHYGEKQNI LPSSLYTCKS LVILKLDGGV LLDVPRMVCL PSLKTLELKG VRYFKQGSLQ RLLCNCPVLE DLVVNLSHHD NMGKLTVIVP
201: SLQRLSLSTP SSREFVIDTP SLLSFQLVDR NDNSHTFLIE NMPKLREAYI NVPFADIKSL IGSITSVKRL AISSEVGYGE GFIFNHLEEL TLWNKYSSNL
301: LVWFLKNSPN LRELMLVSET DDHENLGMLS WNQPSIVPEC MLSSLQKFTW FKYLGRPQDR DIAVYILKNA CRLRTATIKS DTRLFTKLEM ITELRLSSQA
401: SSTCELNFS

Arabidopsis Description

FBD-associated F-box protein At4g10400 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV82]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.