Factsheet for Bra007113.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, plasma membrane

Predictor Summary:

nucleus 2
extracellular 2
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78281	Canola	cytosol	96.88	96.88
Bra007115.1-P	Field mustard	extracellular	62.19	67.69
Bra007169.1-P	Field mustard	extracellular	63.44	67.22
Bra007168.1-P	Field mustard	cytosol, extracellular, nucleus	60.31	65.87
AT3G54910.2	Thale cress	cytosol	62.5	53.62
Bra007114.1-P	Field mustard	extracellular, plasma membrane	67.5	52.05
Bra007112.1-P	Field mustard	extracellular, golgi	62.19	51.55
Bra028194.1-P	Field mustard	cytosol	41.88	45.58
Bra023058.1-P	Field mustard	cytosol	50.62	43.43
Bra035845.1-P	Field mustard	cytosol, extracellular, nucleus	32.19	40.23
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	46.56	35.73
Bra029225.1-P	Field mustard	cytosol	31.25	34.72
Bra032036.1-P	Field mustard	cytosol	18.75	33.15
Bra002819.1-P	Field mustard	extracellular, plasma membrane	55.62	23.39
Bra040954.1-P	Field mustard	cytosol, nucleus, plastid	11.56	21.89
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	24.38	20.31
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	22.5	17.39
Bra039568.1-P	Field mustard	extracellular, golgi	21.25	16.46
Bra022582.1-P	Field mustard	cytosol	19.69	15.83
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	17.19	11.27

Protein Annotations

EnsemblPlants:Bra007113.1	EnsemblPlants:Bra007113.1-P	EnsemblPlantsGene:Bra007113	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387
SEG:seg	SMART:SM00579	SUPFAM:SSF52047	UniParc:UPI00025429A2	UniProt:M4CSC1	MapMan:35.1

Description

AT3G54910 (E=5e-092) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G10400.2); Has 661 Blast hits to 647 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 657; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA09:-:27393962..27395077

Molecular Weight (calculated)

36119.1 Da

IEP (calculated)

4.711

GRAVY (calculated)

0.081

Length

320 amino acids

Sequence
(BLAST)

001: MWIGIAVSHC LRELEMLYES DPAKPFVLPS NLYACKSLVV LKLDGDILLD VPTMASLPSL KTMNLQSVRY SSDKTLPLLL SKCPLLEDLV LDLCEDDTPR
101: YLGVVVPSLQ SLSLSILYNN HIIDGFVLTT PALKYFKLMD YNEHYCLIEN MPNLIEAYLD VDCPDIKNLI ESITSVKRLS ICSKAMLDEG FVFNQLEHLE
201: VCLCMEHSSN QLFRLLKASS NLKRLDISLM HGHVSQGMDD WNQPTTVPEC ILSSLQTLNW SAEYTGEPQE RDIAVYILKH ALHLKTATIK SSELEVTKSE
301: MLKELELSPR ASAACQLMFE

Best Arabidopsis Sequence Match ( AT3G54910.2 )
(BLAST)

001: MWLPKLKYGH RDSSECKRLE CFLDKNLPLH RAPVIESFRL YLIDSKCTPE NIKMWVVIAV SHCLRELEVI YSSYPEKPNI LPSNLYTCKS LVILELCGEI
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD

Arabidopsis Description

At3g54910 [Source:UniProtKB/TrEMBL;Acc:Q501B7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.