Factsheet for Bra007169.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 6
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40231	Canola	cytosol	98.34	70.71
Bra007115.1-P	Field mustard	extracellular	66.56	68.37
Bra007168.1-P	Field mustard	cytosol, extracellular, nucleus	65.23	67.24
Bra007113.1-P	Field mustard	cytosol, extracellular, plasma membrane	67.22	63.44
Bra028194.1-P	Field mustard	cytosol	47.35	48.64
Bra007114.1-P	Field mustard	extracellular, plasma membrane	66.56	48.43
AT3G54910.2	Thale cress	cytosol	58.61	47.45
Bra007112.1-P	Field mustard	extracellular, golgi	59.6	46.63
Bra023058.1-P	Field mustard	cytosol	53.64	43.43
Bra035845.1-P	Field mustard	cytosol, extracellular, nucleus	30.13	35.55
Bra029225.1-P	Field mustard	cytosol	32.78	34.38
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	46.69	33.81
Bra032036.1-P	Field mustard	cytosol	18.54	30.94
Bra002819.1-P	Field mustard	extracellular, plasma membrane	55.96	22.21
Bra040954.1-P	Field mustard	cytosol, nucleus, plastid	10.6	18.93
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	23.84	18.75
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	22.52	16.43
Bra039568.1-P	Field mustard	extracellular, golgi	21.19	15.5
Bra022582.1-P	Field mustard	cytosol	20.2	15.33
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	18.87	11.68

Protein Annotations

EnsemblPlants:Bra007169.1	EnsemblPlants:Bra007169.1-P	EnsemblPlantsGene:Bra007169	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387
SMART:SM00579	SUPFAM:SSF52047	UniParc:UPI0002542A91	UniProt:M4CSH7	MapMan:35.1	:

Description

AT3G54910 (E=1e-096) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G10400.2); Has 661 Blast hits to 647 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 657; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA09:+:27688746..27689814

Molecular Weight (calculated)

34225.0 Da

IEP (calculated)

4.929

GRAVY (calculated)

0.223

Length

302 amino acids

Sequence
(BLAST)

001: MSNILPSNLF TCKSLVVLKL VGEILLDVPR VVSLPSLKTL KIQSVRYFDE ETLQRLLSNC PILEDLVVDL RDYDYESAGK LTVAVPSLQS LSLYIPYCQD
101: LDGFVIETPN LKYFKLMDHS ISGHYCLIEK MPCLIEAYLE VNLPDMKSLI GSITSVKRLT ICSEGIMMLG EGFVFNQLEH LEVCFCTLFS SDLVIELLLK
201: ASSNLKRLGF SFMEHHVPQG MVHWNQPTIV PECILSSLES FSWSKYTGEP EERDIVVYIL KHALHLKTAT INSYGSDVWK LEMLKELELS PRASATCQLL
301: FD

Best Arabidopsis Sequence Match ( AT4G10420.1 )
(BLAST)

001: MWVVVVLSRY VRELEIYSSC YQDKQNILPS SLYTCKSLVI LKLNGGILMD VPRMVCLPSL KTLVLKGVNY FKQESLQRLL SNCPVLEDLV VNLCHHDNMG
101: KFIVIVPSLQ RLSLYIGYKR VLDEFVIDTP SLEYFKLVDR NYDSHPCLIE NMPKLTEAYV DVRSTDLQSL IGSITSVKRL IISSKAMFGD GYIFNRLERL
201: TLHVLEENPS NLLSQFLKDS PNLQELEYFS ELDDSYENMR MFPWNQPSIV PECLLSSLQK FTWSQYLGRT QDRDIAVYIL KNACCLRNAT IDSYTCLVPE
301: LKMIKELTRS SRASTTCELN FS

Arabidopsis Description

FBD / Leucine Rich Repeat domains containing protein [Source:UniProtKB/TrEMBL;Acc:F4JLN7]
SUBAcon: [golgi,extracellular,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.