Factsheet for Bra002819.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32785	Canola	cytosol	41.26	85.09
CDY17463	Canola	cytosol	30.35	77.52
Bra007115.1-P	Field mustard	extracellular	22.86	59.18
Bra007169.1-P	Field mustard	extracellular	22.21	55.96
Bra007113.1-P	Field mustard	cytosol, extracellular, plasma membrane	23.39	55.62
Bra007114.1-P	Field mustard	extracellular, plasma membrane	29.43	53.98
Bra007168.1-P	Field mustard	cytosol, extracellular, nucleus	20.76	53.92
Bra007112.1-P	Field mustard	extracellular, golgi	26.15	51.55
Bra023058.1-P	Field mustard	cytosol	24.7	50.4
Bra028194.1-P	Field mustard	cytosol	19.05	49.32
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	25.1	45.8
Bra029225.1-P	Field mustard	cytosol	16.95	44.79
CDX73429	Canola	mitochondrion	7.23	44.72
Bra035845.1-P	Field mustard	cytosol, extracellular, nucleus	14.85	44.14
Bra032036.1-P	Field mustard	cytosol	8.94	37.57
Bra040954.1-P	Field mustard	cytosol, nucleus, plastid	5.26	23.67
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	11.56	22.92
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	10.91	20.05
Bra039568.1-P	Field mustard	extracellular, golgi	10.78	19.85
Bra022582.1-P	Field mustard	cytosol	9.99	19.1
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	8.67	13.52

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra002819	EnsemblPlants:Bra002819.1	EnsemblPlants:Bra002819.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	UniProt:M4CF37	PFAM:PF00646	PFAM:PF07723
PFAM:PF08387	PFscan:PS50181	SMART:SM00256	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0002544A1D	SEG:seg	:	:	:	:

Description

AT3G54910 (E=5e-110) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G10400.2); Has 661 Blast hits to 647 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 657; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA10:-:7365227..7371249

Molecular Weight (calculated)

87147.3 Da

IEP (calculated)

7.386

GRAVY (calculated)

0.155

Length

761 amino acids

Sequence
(BLAST)

001: MTCLYLLVKI LSHIPTKDVV ATSLLFKRWE FLWTYMKRLE YDQEYQFVRR GIPELTLECG DILIQLPLRL LTCKTLVILD LKGWIDLNIP VTASLPSLMT
101: LHIVLLRKSN YEHFSRILSS FSLLVDLMVE QRTSTAISTL DIAVPSLQRL FIRTVTKKDN GLRYSPHEKS IPKVMINAPC LKYLNIDDRG NDFNVIKDLT
201: QVDMDPSIFS HVIESLRLKL SNYFKPQVIK WIVATAVSRN VRELDISYSS YPEKLNTLPS NLYTSKSLVV LKLSDWILLA VPPMVCLPSL KTLQLQQVAY
301: FNEESLQRLL SNCPALEELK VDIWKDDNTR KFTIVVPSLQ RLSLFIPFDY GIDGLVIKTP SLKYFKLRIH SSISHYCLVE HMPNLIEAYI DVEFPDIKSL
401: IESITSVKRL EICLEVLYEE GIVFSQLEHL KLCRCKDCTS NLLVRLLKDS PNLRVLDLYE MIDHYYCGII PWNPPSTVPA CMLSSLQIFN WSAYSGVPGE
501: RDLAIYMLKN ASHLKTATIL SDECDIPELE MLKELAFSSR ASTTCEFIGL SDLFNDYEFR SCERIQVRLS LVIITPSLES IPLQKLRSLS IMGMDRMDML
601: SDLPDALLVK ILSSLPTKQV VSTMLLSKRW QFLWMFVSRL DYSDDDMCQD GRFLRFLYSS LLLHQAKVLE SFTLKLSGNS RGIDLGVCVT PAVNRSVREL
701: TIEIDASSTE TQFILPRSLY TTGSRTLVTL KLQNAVLVDA SEMVSFPLLK TLSLISMKYV K

Best Arabidopsis Sequence Match ( AT3G54910.2 )
(BLAST)

001: MWLPKLKYGH RDSSECKRLE CFLDKNLPLH RAPVIESFRL YLIDSKCTPE NIKMWVVIAV SHCLRELEVI YSSYPEKPNI LPSNLYTCKS LVILELCGEI
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD

Arabidopsis Description

At3g54910 [Source:UniProtKB/TrEMBL;Acc:Q501B7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.