Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67485 | Canola | cytosol | 91.33 | 93.09 |
| CDY17463 | Canola | cytosol | 75.07 | 92.95 |
| CDY41219 | Canola | cytosol | 25.75 | 56.21 |
| CDX78283 | Canola | extracellular, plasma membrane | 59.08 | 52.53 |
| CDX96200 | Canola | extracellular, plasma membrane | 59.08 | 52.53 |
| CDY41224 | Canola | cytosol, plasma membrane | 58.27 | 52.06 |
| CDX84780 | Canola | cytosol | 25.2 | 51.1 |
| CDX73431 | Canola | endoplasmic reticulum, plasma membrane | 57.18 | 50.72 |
| CDY72604 | Canola | extracellular | 40.38 | 50.68 |
| CDY40225 | Canola | endoplasmic reticulum, extracellular | 53.66 | 50.64 |
| CDX73430 | Canola | extracellular, vacuole | 56.64 | 50.36 |
| CDY40231 | Canola | cytosol | 57.18 | 50.24 |
| CDX73428 | Canola | cytosol, extracellular, plasma membrane | 43.09 | 49.69 |
| CDX78281 | Canola | cytosol | 43.09 | 49.69 |
| CDX79668 | Canola | cytosol | 47.15 | 49.29 |
| CDY40230 | Canola | cytosol | 24.66 | 48.92 |
| CDY41221 | Canola | cytosol | 43.09 | 48.62 |
| CDX84569 | Canola | mitochondrion | 34.42 | 48.11 |
| CDX78279 | Canola | cytosol | 48.51 | 46.49 |
| CDY35372 | Canola | cytosol | 12.2 | 45.92 |
| CDX73429 | Canola | mitochondrion | 14.91 | 44.72 |
| CDY35566 | Canola | cytosol | 16.53 | 44.53 |
| CDY41220 | Canola | cytosol | 18.97 | 44.03 |
| CDX78280 | Canola | extracellular, golgi, mitochondrion, plastid | 55.01 | 43.94 |
| CDY23937 | Canola | mitochondrion | 44.72 | 42.64 |
| CDY40226 | Canola | cytosol | 11.92 | 42.31 |
| Bra002819.1-P | Field mustard | extracellular, plasma membrane | 85.09 | 41.26 |
| CDY34607 | Canola | cytosol | 15.45 | 40.14 |
| CDY16725 | Canola | cytosol, extracellular, nucleus | 25.75 | 37.11 |
| CDY40228 | Canola | cytosol, extracellular, nucleus | 12.47 | 37.1 |
| CDY01651 | Canola | mitochondrion | 33.88 | 36.98 |
| CDX74515 | Canola | cytosol | 46.88 | 36.89 |
| CDY48142 | Canola | cytosol | 18.97 | 35.53 |
| CDX87839 | Canola | cytosol, endoplasmic reticulum, plastid | 39.84 | 34.67 |
| CDY64738 | Canola | extracellular, nucleus, peroxisome | 28.46 | 33.76 |
| CDY52958 | Canola | cytosol | 18.43 | 33.5 |
| CDY22729 | Canola | nucleus | 20.33 | 32.89 |
| CDX73432 | Canola | extracellular, plasma membrane | 36.86 | 31.92 |
| CDY09047 | Canola | cytosol | 24.66 | 20.18 |
| CDY47798 | Canola | plasma membrane | 23.04 | 20.0 |
| CDY53464 | Canola | cytosol | 21.95 | 19.85 |
| CDY55715 | Canola | cytosol, nucleus, plasma membrane | 21.68 | 19.51 |
| CDY38511 | Canola | cytosol | 21.41 | 19.27 |
| CDY66257 | Canola | mitochondrion | 18.7 | 16.05 |
| CDX91627 | Canola | cytosol | 13.82 | 15.69 |
| CDY27080 | Canola | cytosol | 14.36 | 15.59 |
| CDY22940 | Canola | plasma membrane | 31.71 | 13.83 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | UniProt:A0A078H2D8 | EnsemblPlants:CDY32785 | ProteinID:CDY32785 | ProteinID:CDY32785.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00052850001 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PFAM:PF00646 | PFAM:PF08387 |
| PFscan:PS50181 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | SMART:SM00256 | SMART:SM00579 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | UniParc:UPI0004EE9A15 | : | : | : | : |
Description
BnaA10g10640DBnaA10g10640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2D8]
Coordinates
chrLK032299:+:282920..284322
Molecular Weight (calculated)
42774.4 Da
IEP (calculated)
7.679
GRAVY (calculated)
0.031
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKISRFPDE LLVKVLTFLP TKEAVSTSIL SKRWEHLWKW LPKLEYDDQH YSESERKRLR CFIVRSLPLH KAHVIESLRL KLSNYFKPQV IKWIVATAVS
101: RNVRELDISY SSYPEKLNTL PSNLYTSKSL VVLKLSDWIL LAVPPMVCLP SLKTLQLQQR LSLFIPFDYG IDGLVIKTPS LKYFKFRIHS NISHYCLVEH
201: MPNLIEAYID VEFPNIKSLI ESITSVKRLE ICLEVLYEEG IVFSQLEHLK LCRCKDCTSN LLVRLLKDSP NLRVLDLYEM IDHYYCGIIP WNPPSTVPAC
301: MLSSLQIFNW SAYSGVPGER DLAIYMLKNA SHLKTATILS DECDIPELEM LKELAFSSRA STTCEFIFD
101: RNVRELDISY SSYPEKLNTL PSNLYTSKSL VVLKLSDWIL LAVPPMVCLP SLKTLQLQQR LSLFIPFDYG IDGLVIKTPS LKYFKFRIHS NISHYCLVEH
201: MPNLIEAYID VEFPNIKSLI ESITSVKRLE ICLEVLYEEG IVFSQLEHLK LCRCKDCTSN LLVRLLKDSP NLRVLDLYEM IDHYYCGIIP WNPPSTVPAC
301: MLSSLQIFNW SAYSGVPGER DLAIYMLKNA SHLKTATILS DECDIPELEM LKELAFSSRA STTCEFIFD
001: MWLPKLKYGH RDSSECKRLE CFLDKNLPLH RAPVIESFRL YLIDSKCTPE NIKMWVVIAV SHCLRELEVI YSSYPEKPNI LPSNLYTCKS LVILELCGEI
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD
Arabidopsis Description
At3g54910 [Source:UniProtKB/TrEMBL;Acc:Q501B7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.