CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96200	Canola	extracellular, plasma membrane	100.0	100.0
Bra007114.1-P	Field mustard	extracellular, plasma membrane	98.55	98.55
CDY41224	Canola	cytosol, plasma membrane	72.29	72.64
CDY41220	Canola	cytosol	27.23	71.07
CDY72604	Canola	extracellular	49.88	70.41
CDY41219	Canola	cytosol	28.43	69.82
CDX73430	Canola	extracellular, vacuole	69.4	69.4
CDX78281	Canola	cytosol	52.05	67.5
CDX73429	Canola	mitochondrion	19.76	66.67
CDY41221	Canola	cytosol	52.05	66.06
CDY40231	Canola	cytosol	66.75	65.95
CDY40225	Canola	endoplasmic reticulum, extracellular	61.69	65.47
CDX78279	Canola	cytosol	60.72	65.45
CDX73428	Canola	cytosol, extracellular, plasma membrane	50.36	65.31
CDX73431	Canola	endoplasmic reticulum, plasma membrane	65.06	64.9
CDY40230	Canola	cytosol	27.95	62.37
CDY40228	Canola	cytosol, extracellular, nucleus	18.07	60.48
AT3G54910.2	Thale cress	cytosol	53.98	60.05
CDY67485	Canola	cytosol	52.29	59.94
CDY17463	Canola	cytosol	42.89	59.73
CDY32785	Canola	cytosol	52.53	59.08
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	65.3	58.66
CDX79668	Canola	cytosol	48.67	57.22
CDX84569	Canola	mitochondrion	35.9	56.44
CDX84780	Canola	cytosol	22.41	51.1
CDY40226	Canola	cytosol	12.77	50.96
CDY23937	Canola	mitochondrion	44.1	47.29
CDX73432	Canola	extracellular, plasma membrane	44.34	43.19
CDY48142	Canola	cytosol	20.24	42.64
CDY35566	Canola	cytosol	13.73	41.61
CDY16725	Canola	cytosol, extracellular, nucleus	25.3	41.02
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	40.48	39.62
CDY01651	Canola	mitochondrion	32.05	39.35
CDX74515	Canola	cytosol	43.86	38.81
CDY52958	Canola	cytosol	18.8	38.42
CDY64738	Canola	extracellular, nucleus, peroxisome	28.67	38.26
CDY34607	Canola	cytosol	13.01	38.03
CDY35372	Canola	cytosol	7.47	31.63
CDY22729	Canola	nucleus	15.42	28.07
CDY47798	Canola	plasma membrane	17.83	17.41
CDY55715	Canola	cytosol, nucleus, plasma membrane	16.39	16.59
CDY09047	Canola	cytosol	17.59	16.19
CDY53464	Canola	cytosol	15.9	16.18
CDY66257	Canola	mitochondrion	16.14	15.58
CDY38511	Canola	cytosol	15.18	15.37
CDY22940	Canola	plasma membrane	29.88	14.66
CDX91627	Canola	cytosol	10.84	13.85
CDY27080	Canola	cytosol	10.36	12.65

Protein Annotations

EnsemblPlants:CDX78283	EnsemblPlantsGene:GSBRNA2T00129628001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212
PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387	ProteinID:CDX78283	ProteinID:CDX78283.1	SEG:seg
SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE4E2F	MapMan:35.1	:

Description

BnaA09g34780D

Coordinates

chrLK031814:-:2172898..2174653

Molecular Weight (calculated)

47680.9 Da

IEP (calculated)

8.836

GRAVY (calculated)

0.024

Length

415 amino acids

Sequence
(BLAST)

001: MDRISGLSDE LLVKILLFVP TKVAVSTSIL SKRWECLWMW LPKLKYGHMY CSESEWEKLQ CFLDRNLPLH RAPVIESFRL ELFNTRLKPE NIKMWLVLAL
101: SHSLRELEIV YVSYPNRLNI LPSNLFTCKS LVILKLGGRI LLDVTRLVSL PSLKTLRLLK VKYFKDETLQ RLLSNCPILE DLMVDLHERD TTTTKFTALV
201: PSLRRLTLRI PDNPHIDGFM IETPALKYFK LSGNIRNYHY CSIENMPNLI EAHLDVEFPD IKSLIGSATS VKRLTLCSKT LLAEGFVLNQ LEHLEVCTCP
301: MIFSNQLVRL LKASPKLKRL DISVVNHHKP IGMDEWNQPS TVPECLLSSL QSLSWSGEYT GKPQERDIVV YILKHALHLK TATIKSYESA VPKFEMLKEL
401: SLSSRASAAC QLMFD

Best Arabidopsis Sequence Match ( AT4G10400.2 )
(BLAST)

001: MDRISGLPDE VLVKILSFVP TKVAVSTSIL SKRWEFLWMW LTKLKFGSKR YSESEFKRLQ CFLDRNLPLH RAPVIESFRL VLSDSHFKPE DIRMWVVVAV
101: SRYIRELKIY SSHYGEKQNI LPSSLYTCKS LVILKLDGGV LLDVPRMVCL PSLKTLELKG VRYFKQGSLQ RLLCNCPVLE DLVVNLSHHD NMGKLTVIVP
201: SLQRLSLSTP SSREFVIDTP SLLSFQLVDR NDNSHTFLIE NMPKLREAYI NVPFADIKSL IGSITSVKRL AISSEVGYGE GFIFNHLEEL TLWNKYSSNL
301: LVWFLKNSPN LRELMLVSET DDHENLGMLS WNQPSIVPEC MLSSLQKFTW FKYLGRPQDR DIAVYILKNA CRLRTATIKS DTRLFTKLEM ITELRLSSQA
401: SSTCELNFS

Arabidopsis Description

FBD-associated F-box protein At4g10400 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV82]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.