Factsheet for Bra007114.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 3
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plasma membrane
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96200	Canola	extracellular, plasma membrane	98.55	98.55
CDX78283	Canola	extracellular, plasma membrane	98.55	98.55
Bra007115.1-P	Field mustard	extracellular	50.12	70.75
Bra007112.1-P	Field mustard	extracellular, golgi	65.78	70.73
Bra007113.1-P	Field mustard	cytosol, extracellular, plasma membrane	52.05	67.5
Bra007169.1-P	Field mustard	extracellular	48.43	66.56
Bra007168.1-P	Field mustard	cytosol, extracellular, nucleus	45.3	64.16
AT3G54910.2	Thale cress	cytosol	54.46	60.59
Bra023058.1-P	Field mustard	cytosol	48.67	54.16
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	48.67	48.44
Bra028194.1-P	Field mustard	cytosol	32.05	45.24
Bra029225.1-P	Field mustard	cytosol	29.4	42.36
Bra035845.1-P	Field mustard	cytosol, extracellular, nucleus	25.78	41.8
Bra032036.1-P	Field mustard	cytosol	14.46	33.15
Bra002819.1-P	Field mustard	extracellular, plasma membrane	53.98	29.43
Bra040954.1-P	Field mustard	cytosol, nucleus, plastid	8.19	20.12
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	18.31	19.79
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	16.63	16.67
Bra039568.1-P	Field mustard	extracellular, golgi	16.39	16.46
Bra022582.1-P	Field mustard	cytosol	14.46	15.08
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	14.94	12.7

Protein Annotations

EnsemblPlants:Bra007114.1	EnsemblPlants:Bra007114.1-P	EnsemblPlantsGene:Bra007114	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2
PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387	SEG:seg	SMART:SM00579
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00025429A3	UniProt:M4CSC2	MapMan:35.1	:

Description

AT4G10400 (E=3e-121) | F-box family protein

Coordinates

chrA09:-:27400652..27402054

Molecular Weight (calculated)

47742.0 Da

IEP (calculated)

8.593

GRAVY (calculated)

0.036

Length

415 amino acids

Sequence
(BLAST)

001: MDRISGLSDE LLVKILLFVP TKVAVSTSIL SKRWECLWMW LPKLKYGHMY CSESEWEKLQ CFLDRNLPLH RAPVIESFRL ELFNTRLKPE NIKMWLVLAL
101: SHSLRELEIV YVSYPNRLNI LPSNLFTCKS LVILKLGGRI LLDVTRLVSL PSLKTLRLLK VKYFKDETLQ RLLSNCPILE DLMVDLHERD TTTTKFTALV
201: PSLQRLTLRI PDNPHIDGFM IETPALKYFK LSGNIRNYHY CSIENMPNLI EAHLDVEFPD IKSLIGSATS VKRLTLCSKT LLAEGFVFNQ LEHLEVCTCP
301: MIFSNQLVRL LKASPKLKRL DISVVNHHKP IGMDEWNQPS TVPECLLSSL QTLSWSGEYI GEPQERDIVV YILKHALHLK TATIKSYESA VPKFEMLKEL
401: SLSSRASAAC RLMFD

Best Arabidopsis Sequence Match ( AT4G10400.2 )
(BLAST)

001: MDRISGLPDE VLVKILSFVP TKVAVSTSIL SKRWEFLWMW LTKLKFGSKR YSESEFKRLQ CFLDRNLPLH RAPVIESFRL VLSDSHFKPE DIRMWVVVAV
101: SRYIRELKIY SSHYGEKQNI LPSSLYTCKS LVILKLDGGV LLDVPRMVCL PSLKTLELKG VRYFKQGSLQ RLLCNCPVLE DLVVNLSHHD NMGKLTVIVP
201: SLQRLSLSTP SSREFVIDTP SLLSFQLVDR NDNSHTFLIE NMPKLREAYI NVPFADIKSL IGSITSVKRL AISSEVGYGE GFIFNHLEEL TLWNKYSSNL
301: LVWFLKNSPN LRELMLVSET DDHENLGMLS WNQPSIVPEC MLSSLQKFTW FKYLGRPQDR DIAVYILKNA CRLRTATIKS DTRLFTKLEM ITELRLSSQA
401: SSTCELNFS

Arabidopsis Description

FBD-associated F-box protein At4g10400 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV82]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.