Factsheet for Bra007115.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72604	Canola	extracellular	100.0	100.0
Bra007168.1-P	Field mustard	cytosol, extracellular, nucleus	69.39	69.62
Bra007169.1-P	Field mustard	extracellular	68.37	66.56
Bra007113.1-P	Field mustard	cytosol, extracellular, plasma membrane	67.69	62.19
Bra007114.1-P	Field mustard	extracellular, plasma membrane	70.75	50.12
Bra028194.1-P	Field mustard	cytosol	49.32	49.32
AT3G54910.2	Thale cress	cytosol	61.9	48.79
Bra007112.1-P	Field mustard	extracellular, golgi	59.52	45.34
Bra023058.1-P	Field mustard	cytosol	51.36	40.48
Bra035845.1-P	Field mustard	cytosol, extracellular, nucleus	32.99	37.89
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	47.96	33.81
Bra032036.1-P	Field mustard	cytosol	19.73	32.04
Bra029225.1-P	Field mustard	cytosol	31.29	31.94
Bra002819.1-P	Field mustard	extracellular, plasma membrane	59.18	22.86
Bra040954.1-P	Field mustard	cytosol, nucleus, plastid	12.24	21.3
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	25.51	19.53
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	24.49	17.39
Bra039568.1-P	Field mustard	extracellular, golgi	23.47	16.71
Bra022582.1-P	Field mustard	cytosol	21.09	15.58
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	20.41	12.3

Protein Annotations

EnsemblPlants:Bra007115.1	EnsemblPlants:Bra007115.1-P	EnsemblPlantsGene:Bra007115	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387
SMART:SM00579	SUPFAM:SSF52058	UniParc:UPI00025429A4	UniProt:M4CSC3	MapMan:35.1	:

Description

AT3G54910 (E=4e-096) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G10400.2); Has 661 Blast hits to 647 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 657; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA09:-:27407857..27408894

Molecular Weight (calculated)

33558.9 Da

IEP (calculated)

4.735

GRAVY (calculated)

0.096

Length

294 amino acids

Sequence
(BLAST)

001: MLPSNLFTCK SLVILKLAGD IILDVPRMVS LPSLKTLRLQ KVMFFNGETL QRLLSNCPIL EDLMVDLHDY DDTGKLSIVV PSLQSLSLFI PYRHEIDGFM
101: IETPSLKYFK LRDDSWHDHY SLIGNMPFLV EAYVDVDLPV INSVIRSITS VKRLAICSQD MLDEGFVFNQ LEHLEVCLCT LLFSNQLVRL LNASSKLKRL
201: DISLTDGHVP RDMDDWNQPS TVPECLLSSL QSLNWLEYTG EPQERDIVVY ILKHALHLKT ATITLTESDF TELDMIKELA RSSRASTTCE LMFD

Best Arabidopsis Sequence Match ( AT4G10420.1 )
(BLAST)

001: MWVVVVLSRY VRELEIYSSC YQDKQNILPS SLYTCKSLVI LKLNGGILMD VPRMVCLPSL KTLVLKGVNY FKQESLQRLL SNCPVLEDLV VNLCHHDNMG
101: KFIVIVPSLQ RLSLYIGYKR VLDEFVIDTP SLEYFKLVDR NYDSHPCLIE NMPKLTEAYV DVRSTDLQSL IGSITSVKRL IISSKAMFGD GYIFNRLERL
201: TLHVLEENPS NLLSQFLKDS PNLQELEYFS ELDDSYENMR MFPWNQPSIV PECLLSSLQK FTWSQYLGRT QDRDIAVYIL KNACCLRNAT IDSYTCLVPE
301: LKMIKELTRS SRASTTCELN FS

Arabidopsis Description

FBD / Leucine Rich Repeat domains containing protein [Source:UniProtKB/TrEMBL;Acc:F4JLN7]
SUBAcon: [golgi,extracellular,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.