Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40228 | Canola | cytosol, extracellular, nucleus | 20.91 | 62.9 |
| Bra007113.1-P | Field mustard | cytosol, extracellular, plasma membrane | 53.62 | 62.5 |
| CDY41221 | Canola | cytosol | 54.69 | 62.39 |
| CDX78281 | Canola | cytosol | 53.35 | 62.19 |
| Bra007115.1-P | Field mustard | extracellular | 48.79 | 61.9 |
| CDY72604 | Canola | extracellular | 48.79 | 61.9 |
| CDX73428 | Canola | cytosol, extracellular, plasma membrane | 51.47 | 60.0 |
| CDY41220 | Canola | cytosol | 25.47 | 59.75 |
| Bra007168.1-P | Field mustard | cytosol, extracellular, nucleus | 46.65 | 59.39 |
| CDX78279 | Canola | cytosol | 60.86 | 58.96 |
| Bra007169.1-P | Field mustard | extracellular | 47.45 | 58.61 |
| CDX73430 | Canola | extracellular, vacuole | 62.73 | 56.39 |
| CDX73431 | Canola | endoplasmic reticulum, plasma membrane | 62.47 | 56.01 |
| Bra007112.1-P | Field mustard | extracellular, golgi | 57.91 | 55.96 |
| CDY41224 | Canola | cytosol, plasma membrane | 61.93 | 55.93 |
| CDY41219 | Canola | cytosol | 25.2 | 55.62 |
| Bra007114.1-P | Field mustard | extracellular, plasma membrane | 60.59 | 54.46 |
| CDX78283 | Canola | extracellular, plasma membrane | 60.05 | 53.98 |
| CDX96200 | Canola | extracellular, plasma membrane | 60.05 | 53.98 |
| AT4G10420.1 | Thale cress | extracellular, golgi, nucleus | 46.11 | 53.42 |
| CDY40231 | Canola | cytosol | 59.79 | 53.1 |
| CDY40226 | Canola | cytosol | 14.75 | 52.88 |
| CDY40230 | Canola | cytosol | 26.27 | 52.69 |
| AT4G10400.1 | Thale cress | cytosol | 57.1 | 52.08 |
| CDY40225 | Canola | endoplasmic reticulum, extracellular | 54.42 | 51.92 |
| AT5G38580.1 | Thale cress | cytosol | 22.79 | 50.6 |
| AT4G10410.1 | Thale cress | cytosol, plasma membrane, plastid | 35.66 | 50.57 |
| AT4G09920.1 | Thale cress | cytosol, plasma membrane, plastid | 40.48 | 47.78 |
| CDX78280 | Canola | extracellular, golgi, mitochondrion, plastid | 57.91 | 46.75 |
| AT5G38590.2 | Thale cress | cytosol | 47.45 | 43.17 |
| AT5G38570.1 | Thale cress | cytosol, nucleus, plasma membrane | 43.43 | 42.74 |
| AT5G38565.1 | Thale cress | cytosol, peroxisome, plastid | 35.92 | 38.4 |
| CDX73432 | Canola | extracellular, plasma membrane | 41.82 | 36.62 |
| AT4G15075.1 | Thale cress | cytosol | 15.55 | 34.52 |
| Bra040954.1-P | Field mustard | cytosol, nucleus, plastid | 10.46 | 23.08 |
| AT5G56700.2 | Thale cress | cytosol | 21.72 | 22.5 |
| AT5G60610.1 | Thale cress | cytosol | 18.77 | 18.04 |
| AT2G26860.2 | Thale cress | cytosol | 19.57 | 18.02 |
| AT5G11370.1 | Thale cress | cytosol, extracellular | 14.75 | 17.68 |
| AT4G00315.1 | Thale cress | cytosol | 19.3 | 16.33 |
| AT5G62970.1 | Thale cress | cytosol | 19.3 | 16.04 |
| AT5G56690.1 | Thale cress | endoplasmic reticulum | 17.16 | 15.92 |
| AT1G55660.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 20.91 | 15.85 |
| AT1G19410.1 | Thale cress | cytosol | 17.96 | 15.4 |
| AT5G56410.1 | Thale cress | cytosol | 18.23 | 13.52 |
| AT4G15060.1 | Thale cress | cytosol | 13.4 | 9.28 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:824656 | ProteinID:AEE79310.1 | ProteinID:AEE79311.1 | ProteinID:AEE79312.1 |
| ArrayExpress:AT3G54910 | EnsemblPlantsGene:AT3G54910 | RefSeq:AT3G54910 | TAIR:AT3G54910 | RefSeq:AT3G54910-TAIR-G | EnsemblPlants:AT3G54910.2 |
| TAIR:AT3G54910.2 | EMBL:BT022050 | InterPro:FBD | GO:GO:0008150 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_2 | RefSeq:NP_001030863.1 | RefSeq:NP_001078289.1 | RefSeq:NP_191051.2 | PFAM:PF07723 | PFAM:PF08387 |
| PO:PO:0000293 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | UniProt:Q501B7 | SMART:SM00579 | SUPFAM:SSF52047 |
| UniParc:UPI000034F006 | SEG:seg | : | : | : | : |
Description
At3g54910 [Source:UniProtKB/TrEMBL;Acc:Q501B7]
Coordinates
chr3:-:20342756..20345594
Molecular Weight (calculated)
42790.3 Da
IEP (calculated)
6.662
GRAVY (calculated)
0.005
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MWLPKLKYGH RDSSECKRLE CFLDKNLPLH RAPVIESFRL YLIDSKCTPE NIKMWVVIAV SHCLRELEVI YSSYPEKPNI LPSNLYTCKS LVILELCGEI
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.