Factsheet for Bra007112.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	99.22	82.9
Bra007114.1-P	Field mustard	extracellular, plasma membrane	70.73	65.78
Bra007113.1-P	Field mustard	cytosol, extracellular, plasma membrane	51.55	62.19
Bra007169.1-P	Field mustard	extracellular	46.63	59.6
Bra007115.1-P	Field mustard	extracellular	45.34	59.52
AT3G54910.2	Thale cress	cytosol	55.96	57.91
Bra007168.1-P	Field mustard	cytosol, extracellular, nucleus	42.75	56.31
Bra023058.1-P	Field mustard	cytosol	46.37	47.99
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	49.74	46.04
Bra028194.1-P	Field mustard	cytosol	32.38	42.52
Bra029225.1-P	Field mustard	cytosol	28.24	37.85
Bra035845.1-P	Field mustard	cytosol, extracellular, nucleus	23.83	35.94
Bra032036.1-P	Field mustard	cytosol	16.06	34.25
Bra002819.1-P	Field mustard	extracellular, plasma membrane	51.55	26.15
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	17.1	17.19
Bra040954.1-P	Field mustard	cytosol, nucleus, plastid	6.99	15.98
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	16.84	15.7
Bra022582.1-P	Field mustard	cytosol	15.54	15.08
Bra039568.1-P	Field mustard	extracellular, golgi	15.54	14.53
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	14.77	11.68

Protein Annotations

EnsemblPlants:Bra007112.1	EnsemblPlants:Bra007112.1-P	EnsemblPlantsGene:Bra007112	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2
PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387	SEG:seg	SMART:SM00579
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00025429A1	UniProt:M4CSC0	MapMan:35.1	:

Description

AT5G38570 (E=7e-060) | F-box family protein

Coordinates

chrA09:-:27390126..27391536

Molecular Weight (calculated)

44347.0 Da

IEP (calculated)

6.319

GRAVY (calculated)

-0.062

Length

386 amino acids

Sequence
(BLAST)

001: MDRISGLSDE LLVKILLLVP TKVAVSTSIL SKRWECLWMW LPKLKYDFRG CPEPEGKRLL LFLDRNLPLH RAPVIESFRL ELYGSYLSPE NVKMWVVIAL
101: SHCLRELDIL HESYPPSKPI VLPSNLFTCK SLSVLKLDGD IILDVPRMVS LPSLKTLQLQ SVTYSKDETL QRLLYNCPVL EDLMLHLRDY GDTMQKYFKL
201: VDDNDKSHYC LIEHMPNLIE AHLDVSLTHI KSLIGSITSV KRLTICSRFD EGFVFNRLEH LKVCICNDHS SNQLFRLLKS SSILQELNLF SMEDHEPQGM
301: DDWNEPSTVP ECLLSSLQTL SWSTYTGEPQ ERDIVVYILK HALHLKTARI KSYESAVPKF DMLKELSLSS RASASCQLIF ECASED

Best Arabidopsis Sequence Match ( AT4G10400.2 )
(BLAST)

001: MDRISGLPDE VLVKILSFVP TKVAVSTSIL SKRWEFLWMW LTKLKFGSKR YSESEFKRLQ CFLDRNLPLH RAPVIESFRL VLSDSHFKPE DIRMWVVVAV
101: SRYIRELKIY SSHYGEKQNI LPSSLYTCKS LVILKLDGGV LLDVPRMVCL PSLKTLELKG VRYFKQGSLQ RLLCNCPVLE DLVVNLSHHD NMGKLTVIVP
201: SLQRLSLSTP SSREFVIDTP SLLSFQLVDR NDNSHTFLIE NMPKLREAYI NVPFADIKSL IGSITSVKRL AISSEVGYGE GFIFNHLEEL TLWNKYSSNL
301: LVWFLKNSPN LRELMLVSET DDHENLGMLS WNQPSIVPEC MLSSLQKFTW FKYLGRPQDR DIAVYILKNA CRLRTATIKS DTRLFTKLEM ITELRLSSQA
401: SSTCELNFS

Arabidopsis Description

FBD-associated F-box protein At4g10400 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV82]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.