Factsheet for Bra039568.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	74.58	80.21
AT4G15075.1	Thale cress	cytosol	18.89	46.43
Bra022582.1-P	Field mustard	cytosol	43.34	44.97
Bra040954.1-P	Field mustard	cytosol, nucleus, plastid	16.71	40.83
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	39.95	39.86
CDY22940	Canola	plasma membrane	81.6	39.83
AT4G15060.1	Thale cress	cytosol	45.04	34.51
Bra032036.1-P	Field mustard	cytosol	13.08	29.83
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	31.48	26.64
Bra028194.1-P	Field mustard	cytosol	16.95	23.81
Bra007115.1-P	Field mustard	extracellular	16.71	23.47
Bra007168.1-P	Field mustard	cytosol, extracellular, nucleus	16.22	22.87
Bra007113.1-P	Field mustard	cytosol, extracellular, plasma membrane	16.46	21.25
Bra007169.1-P	Field mustard	extracellular	15.5	21.19
Bra035845.1-P	Field mustard	cytosol, extracellular, nucleus	11.86	19.14
Bra023058.1-P	Field mustard	cytosol	17.19	19.03
Bra029225.1-P	Field mustard	cytosol	11.86	17.01
Bra007114.1-P	Field mustard	extracellular, plasma membrane	16.46	16.39
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	15.98	15.83
Bra007112.1-P	Field mustard	extracellular, golgi	14.53	15.54
Bra002819.1-P	Field mustard	extracellular, plasma membrane	19.85	10.78

Protein Annotations

EnsemblPlants:Bra039568.1	EnsemblPlants:Bra039568.1-P	EnsemblPlantsGene:Bra039568	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387
SEG:seg	SignalP:SignalP-noTM	SMART:SM00579	SUPFAM:SSF52047	UniParc:UPI0002544E2D	UniProt:M4FEP6
MapMan:35.1	:	:	:	:	:

Description

AT4G15060 (E=8e-072) | F-box protein-related

Coordinates

chrA01:-:11945718..11947184

Molecular Weight (calculated)

47510.3 Da

IEP (calculated)

5.804

GRAVY (calculated)

-0.090

Length

413 amino acids

Sequence
(BLAST)

001: MNFSGCGCLL FLPTKVAVST SILSNSKRWE FLWMWLPKLE YDHSMDERKS LSRFINLNMP LHRAPVIESL RLNFSHGYTG SVTPEDVRQW VALAVTRFLR
101: ELSLDLTSED NPTKLPSSLY TCKSLVILEL KGSNLVDVHR TSCLPSLKTL LLQGVLYADQ KSLHKLLSSC PVLEDLFVEQ YGCESEHFLE AVSVIVPSLQ
201: RLTLKLCRGY FFHRLVINTP SLKYFKIEDY TYEHTNGIDD DDYSFYSDDM PKLEEMEVHS TYLDIQNFAL YREGIVLSQL RRLKLCSCTI NWSKLLVRLL
301: KDSPNLQELE IHLDGDHTNI CEDPPVCWEN ELACVPDCLL SSLQTFKWTR IYGSPKEVDL VKYVLRNARC LKTATILFRS ISYSALEEDE LEMVIQDLSL
401: SSRGSKDAKL VFV

Best Arabidopsis Sequence Match ( AT4G15060.2 )
(BLAST)

001: MSTVRESWLK PKKNIQTNLG DYEDMDKISR LPDDLLVKVL LFLPTKIAVS TSILSKRWEF LWMWLPKLEY HNTNYSASEE QRLRSFINLN LQLHRAPIIE
101: SLRLKFSLGR SIKPQNIKQW IIIAVFRCVR ELSINLFPLY CIENPAKLPS SLYISKSLVI LKLKDQILVD VPRMAYLPSL KYLLLKRVTY KDSNSLHQLL
201: SSCPVLKNLV VERDEYNHDE TLSITVSSLQ RLTLKISRGG SFDELVINTP SLKYFKLTDY LGECETELDD DSYSYVFKDM PKLEEAHIDS TYPDIGKFVR
301: SITSVKRLSL CVKVNAEEAL YREGICFKQL EHLKLCPCDS NWSKLLARLL KDSPNLRELE IKLNKDHKAS FDDPACLENQ LNYVVQSSIP SLERFTWTWI
401: YGSQNEIDYL EKLKKRLLLT NWQNLV

Arabidopsis Description

CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Re /.../omains containing protein (TAIR:AT1G55660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G15060]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.