Factsheet for Bra031796.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66257	Canola	mitochondrion	73.98	83.95
Bra022582.1-P	Field mustard	cytosol	33.4	40.95
AT5G60610.1	Thale cress	cytosol	32.38	40.72
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	32.58	38.41
Bra032036.1-P	Field mustard	cytosol	13.93	37.57
Bra040954.1-P	Field mustard	cytosol, nucleus, plastid	11.89	34.32
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	26.64	33.85
Bra039568.1-P	Field mustard	extracellular, golgi	26.64	31.48
Bra028194.1-P	Field mustard	cytosol	13.32	22.11
Bra007115.1-P	Field mustard	extracellular	12.3	20.41
Bra007168.1-P	Field mustard	cytosol, extracellular, nucleus	12.09	20.14
Bra007169.1-P	Field mustard	extracellular	11.68	18.87
Bra029225.1-P	Field mustard	cytosol	10.66	18.06
Bra007113.1-P	Field mustard	cytosol, extracellular, plasma membrane	11.27	17.19
Bra023058.1-P	Field mustard	cytosol	12.91	16.89
Bra035845.1-P	Field mustard	cytosol, extracellular, nucleus	8.61	16.41
Bra007114.1-P	Field mustard	extracellular, plasma membrane	12.7	14.94
Bra007112.1-P	Field mustard	extracellular, golgi	11.68	14.77
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	11.48	13.43
Bra002819.1-P	Field mustard	extracellular, plasma membrane	13.52	8.67

Protein Annotations

EnsemblPlants:Bra031796.1	EnsemblPlants:Bra031796.1-P	EnsemblPlantsGene:Bra031796	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387
SignalP:SignalP-TM	SUPFAM:SSF52047	TMHMM:TMhelix	UniParc:UPI000254290E	UniProt:M4ESL6	MapMan:35.1

Description

AT5G56700 (E=2e-072) | F-box protein-related

Coordinates

chrA09:+:34711240..34714261

Molecular Weight (calculated)

55724.9 Da

IEP (calculated)

8.060

GRAVY (calculated)

-0.268

Length

488 amino acids

Sequence
(BLAST)

001: MKTFKISYFV VVLITFLAIA ITLSEPLRVE ASHRDRYGLV ITATQGKKGG NRTSAMTCDK SPKVCRLKGS SGRDCCRKRD IVEGALRSAT KGDRVHMGCA
101: AMLEETIGVQ PYKKTIWTES VDYQMNYWLR YYPFFRQKML SQLAFCPNNG GTQTSSTRIC PYIKPPALES LVLKSCNAEL FQPENIKLWV GIAVSRCVRE
201: LTLSIRYNSP RNKPFVPLPS SFYTCCSSLT ALKLKGDSIF VDVPQSVNLP SLKTLKLRDV TYLNDDALRL LLSNCTALEE LFIDRYGEAD DNVRALVVEN
301: STLQRLTLKM YSDHLDVQHV IVTPSLKYFK LYDEGHDLSY SIEHMPKLEE ADIDVSSSLD ELLGSMTPVK RLSLRQFFNR DDELEHVKLS FYSDDWSKLL
401: VWLLRNSPKL RELNIYVDQS DSQFQDYAPV EWKNRSSVPE CLQNTLETFK FEGFKGTQEE GDFLSFFFKN ASCLKSTSIT DYVTQRGI

Best Arabidopsis Sequence Match ( AT5G56700.2 )
(BLAST)

001: MWLSKLEFYF SDGSESACLR DFIAKNLPLH KAPIIESLRF CSFFGSLQPK DLKSWVRIAV SRCVRELSIS LHDTTAAVSL PSSLYTCKSL VTLKLYGKKV
101: LLDVPRTVFL PSLKTLQLER LRYSDEDSLR LLLSYCPVLE DLSIVREDYD NLRALVVIVP SLQRLSLEIP GNCSSDGYVI VTPSLKYFKV VDYRESMSYL
201: IEQMPELEEA DIVVLQYPEK LLESVTFFKR LSIRVIFNTY TETVYRDGIV FNRLENLKLC ICNGDWSKLL IQFLKDSPNL RVLNLLVDDY PSSLGDYEPV
301: RWKNNKSSVP KCLLESLETF EFAGYIGTPE ERDFLSYIFK HARCLKSSSI LSRPERYHGI

Arabidopsis Description

FBD / Leucine Rich Repeat domains containing protein [Source:TAIR;Acc:AT5G56700]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.