Factsheet for Bra007168.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 3
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40230	Canola	cytosol	60.07	94.62
Bra007115.1-P	Field mustard	extracellular	69.62	69.39
Bra007169.1-P	Field mustard	extracellular	67.24	65.23
Bra007113.1-P	Field mustard	cytosol, extracellular, plasma membrane	65.87	60.31
AT3G54910.2	Thale cress	cytosol	59.39	46.65
Bra028194.1-P	Field mustard	cytosol	45.73	45.58
Bra007114.1-P	Field mustard	extracellular, plasma membrane	64.16	45.3
Bra007112.1-P	Field mustard	extracellular, golgi	56.31	42.75
Bra023058.1-P	Field mustard	cytosol	49.83	39.14
Bra035845.1-P	Field mustard	cytosol, extracellular, nucleus	29.35	33.59
Bra029225.1-P	Field mustard	cytosol	32.76	33.33
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	44.37	31.18
Bra032036.1-P	Field mustard	cytosol	16.72	27.07
Bra002819.1-P	Field mustard	extracellular, plasma membrane	53.92	20.76
Bra040954.1-P	Field mustard	cytosol, nucleus, plastid	11.95	20.71
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	24.91	19.01
Bra039568.1-P	Field mustard	extracellular, golgi	22.87	16.22
Bra022582.1-P	Field mustard	cytosol	20.82	15.33
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	21.5	15.22
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	20.14	12.09

Protein Annotations

EnsemblPlants:Bra007168.1	EnsemblPlants:Bra007168.1-P	EnsemblPlantsGene:Bra007168	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387
SEG:seg	SMART:SM00579	SUPFAM:SSF52047	UniParc:UPI0002542A90	UniProt:M4CSH6	MapMan:35.1

Description

AT3G54910 (E=8e-084) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G10400.2); Has 661 Blast hits to 647 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 657; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA09:+:27685759..27686791

Molecular Weight (calculated)

33333.5 Da

IEP (calculated)

4.925

GRAVY (calculated)

0.058

Length

293 amino acids

Sequence
(BLAST)

001: MYTSKSLVIL KLDGEILLDV PRMVSLPSLK TLKLQSVRYV NDETLQRLLS NCPILEDLVV RLREYGDTMQ KLTVVAPSVR SLSLCIPYSH EIAEYVIETP
101: SLKYFKLVDY SNNDHYGLIE NMPYLIEAYV DCCCPDIYSL INSITYVKRL TICSEATLDG LVTLVFNQLE HLEVCLCTVL FSSQLVQLLN ASSKLKRVDI
201: SLMDGHDPRQ DMDYWKEPST VPECLLSSLQ SLSWSAYTGE PEERAIVGYI LKHAVHLKTA TIKSYGSDVW NLEILKELEL SPRASKTCQL MFE

Best Arabidopsis Sequence Match ( AT3G54910.1 )
(BLAST)

001: MWLPKLKYGH RDSSECKRLE CFLDKNLPLH RAPVIESFRL YLIDSKCTPE NIKMWVVIAV SHCLRELEVI YSSYPEKPNI LPSNLYTCKS LVILELCGEI
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD

Arabidopsis Description

At3g54910 [Source:UniProtKB/TrEMBL;Acc:Q501B7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.