Factsheet for Bra040954.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	44.97	19.79
Bra022582.1-P	Field mustard	cytosol	40.24	17.09
Bra039568.1-P	Field mustard	extracellular, golgi	40.83	16.71
Bra032036.1-P	Field mustard	cytosol	15.98	14.92
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	36.09	14.73
CDY40228	Canola	cytosol, extracellular, nucleus	9.47	12.9
Bra029225.1-P	Field mustard	cytosol	21.89	12.85
Bra007115.1-P	Field mustard	extracellular	21.3	12.24
Bra007168.1-P	Field mustard	cytosol, extracellular, nucleus	20.71	11.95
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	34.32	11.89
Bra007113.1-P	Field mustard	cytosol, extracellular, plasma membrane	21.89	11.56
Bra007169.1-P	Field mustard	extracellular	18.93	10.6
AT3G54910.2	Thale cress	cytosol	23.08	10.46
Bra028194.1-P	Field mustard	cytosol	17.75	10.2
Bra023058.1-P	Field mustard	cytosol	20.71	9.38
Bra035845.1-P	Field mustard	cytosol, extracellular, nucleus	13.02	8.59
Bra007114.1-P	Field mustard	extracellular, plasma membrane	20.12	8.19
Bra007112.1-P	Field mustard	extracellular, golgi	15.98	6.99
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	16.57	6.71
Bra002819.1-P	Field mustard	extracellular, plasma membrane	23.67	5.26

Protein Annotations

Gene3D:1.10.1600.10	Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra040954	EnsemblPlants:Bra040954.1	EnsemblPlants:Bra040954.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004003	GO:GO:0005488
GO:GO:0006139	GO:GO:0006259	GO:GO:0006303	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	InterPro:IPR032675	InterPro:Ku_C
InterPro:LRR_dom_sf	UniProt:M4FIM5	PFAM:PF03730	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	SUPFAM:SSF52047
UniParc:UPI000253EADB	SEG:seg	:	:	:	:

Description

AT4G15060 (E=7e-041) | F-box protein-related

Coordinates

chrScaffold000333:+:15646..16892

Molecular Weight (calculated)

19874.3 Da

IEP (calculated)

4.328

GRAVY (calculated)

-0.519

Length

169 amino acids

Sequence
(BLAST)

001: MVYSNEKSLH QLLSHCPVLE DLVLERNDED NNSPFTLSVI VPSLQRLTLK ISRGYHFEGL VINTPSLMYF KILDYLEEYA RDDNSNYSYY FEDTPKLEEA
101: DIESTYPDIN KFVRSIRSVK RLSLCIRVNA DEERHYAILQ AIALDEDELR ETRDETLPDE EGMNRLQLF

Best Arabidopsis Sequence Match ( AT4G15060.1 )
(BLAST)

001: MPNLEEADIS STYPDIYKFV RSVTSVKRLS LCIRVNAEEA LYPDGIVFNQ LENLKLCPCD SNWSKLFVRL LKYSPNLREL EVSLNEGHTK CCVDPQVSLE
101: NQLNFVPECL LSSLQTFKWT GIHGSLKVMD LAKYILRNAR CLKTATILFQ PALETERETM IQELLLSFRD MDKISRLPDD LLVKVLLFLP TKIAVSTSIL
201: SKRWEFLWMW LPKLEYHNTN YSASEEQRLR SFINLNLQLH RAPIIESLRL KFSLGRSIKP QNIKQWIIIA VFRCVRELSI NLFPLYCIEN PAKLPSSLYI
301: SKSLVILKLK DQILVDVPRM AYLPSLKYLL LKRVTYKDSN SLHQLLSSCP VLKNLVVERD EYNHDETLSI TVSSLQRLTL KISRGGSFDE LVINTPSLKY
401: FKLTDYLGEC ETELDDDSYS YVFKDMPKLE EAHIDSTYPD IGKFVRSITS VKRLSLCVKV NAEEDSPNLR ELEIKLNKDH KASFDDPACL ENQLNYVVQS
501: SIPSLERFTW TWIYGSQNEI DYLEKLKKRL LLTNWQNLV

Arabidopsis Description

CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Re /.../omains containing protein (TAIR:AT1G55660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G15060]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.