Factsheet for Bra022582.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27080	Canola	cytosol	77.64	90.88
CDX91627	Canola	cytosol	68.09	83.38
AT5G56700.2	Thale cress	cytosol	51.76	57.22
AT5G56690.1	Thale cress	endoplasmic reticulum	54.02	53.48
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	53.77	51.69
Bra032036.1-P	Field mustard	cytosol	20.1	44.2
Bra039568.1-P	Field mustard	extracellular, golgi	44.97	43.34
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	39.7	41.15
Bra040954.1-P	Field mustard	cytosol, nucleus, plastid	17.09	40.24
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	40.95	33.4
Bra028194.1-P	Field mustard	cytosol	19.35	26.19
Bra007115.1-P	Field mustard	extracellular	15.58	21.09
Bra007168.1-P	Field mustard	cytosol, extracellular, nucleus	15.33	20.82
Bra007169.1-P	Field mustard	extracellular	15.33	20.2
Bra029225.1-P	Field mustard	cytosol	14.32	19.79
Bra007113.1-P	Field mustard	cytosol, extracellular, plasma membrane	15.83	19.69
Bra023058.1-P	Field mustard	cytosol	17.09	18.23
Bra035845.1-P	Field mustard	cytosol, extracellular, nucleus	11.56	17.97
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	16.83	16.07
Bra007112.1-P	Field mustard	extracellular, golgi	15.08	15.54
Bra007114.1-P	Field mustard	extracellular, plasma membrane	15.08	14.46
Bra002819.1-P	Field mustard	extracellular, plasma membrane	19.1	9.99

Protein Annotations

EnsemblPlants:Bra022582.1	EnsemblPlants:Bra022582.1-P	EnsemblPlantsGene:Bra022582	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2
PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0002546FD6	UniProt:M4E1D4	MapMan:35.1	:	:	:

Description

AT5G60610 (E=1e-107) | F-box family protein

Coordinates

chrA02:+:8751000..8752347

Molecular Weight (calculated)

45595.0 Da

IEP (calculated)

5.216

GRAVY (calculated)

-0.100

Length

398 amino acids

Sequence
(BLAST)

001: MDKISGLSDD LLVKILSFVP TKVAVSTSVL SKRWECRWMW VPTLEYDDFE DINTDIKDMY RVSVHKNLIS HRAPIIESLR LKFCLGSLQP EDIKQWVSIA
101: VSRCVRVLSI TSLSDDKPDS ALPSSLYTSK TLVTLKLEGN KILVDVPPTV CLPSLTTLQL SCVTYLDEAS LRMLLSNCPV LEDLVIERDT ADDNAKGLVV
201: AVPSLQRLSL QIDGGCCSYD GYVIDTPSLM YFKVEDYRDR DGFSYLIKDM PKLEEADIAV KYGLQEFLES VTSVKRLSIK VLFNNEEESM YCSCIVFSQL
301: QRLKLSICND DWSKLLFRLL KDSPKLRVLN LHRASRYQRF DEYERSSWDN EWSVTPNCLL KTLETFEYSG CMGRPEERAF LSFFFNNARC LKSTSILR

Best Arabidopsis Sequence Match ( AT5G60610.2 )
(BLAST)

001: MDRISGLPDE LLVKIISFVP TKVAVSTSIL SKRWESLWKW VPKLECDCTE PALRDFILKN LPLQARIIES LYLRFRRESF LFQDIKLWGG IAISHCLREL
101: RIDFFSHYAN PYVILPRSLY TCKSLVTLKL LGLGIRVDVP RDVCLPSLKT LLLQCVAYSE EDPLRLLLSC CPVLEDLVIE LDDANQNVKA LVVIVPTLQC
201: LSLKIPASCS DERYLIVTPS LKYFKVEDDR EIFNALIENM PELEEADIYV TQHIETLLES VTSVKRLTLR QLYNSIDEYK CRAGIVFKQL EQLELSICSD
301: NWTKLVIWLL QNSPNLRVLN LDADSDYERY EEYEQDNWKN IQRSVPKCLK SSLKTLEFAG YTARPEERDF LSFIFKKARC LKTSSISH

Arabidopsis Description

FBD-associated F-box protein At5g60610 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.