CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27080	Canola	cytosol	89.54	85.59
Bra022582.1-P	Field mustard	cytosol	83.38	68.09
AT5G56700.2	Thale cress	cytosol	47.08	42.5
AT5G56690.1	Thale cress	endoplasmic reticulum	52.31	42.29
CDY38511	Canola	cytosol	50.77	40.24
CDY53464	Canola	cytosol	50.46	40.2
CDY55715	Canola	cytosol, nucleus, plasma membrane	48.92	38.78
CDY34607	Canola	cytosol	16.92	38.73
CDY47798	Canola	plasma membrane	41.23	31.53
CDY35372	Canola	cytosol	9.23	30.61
CDY66257	Canola	mitochondrion	39.69	30.0
CDY22729	Canola	nucleus	20.62	29.39
CDY35566	Canola	cytosol	11.69	27.74
CDY09047	Canola	cytosol	35.38	25.5
CDX84780	Canola	cytosol	13.23	23.63
CDY41219	Canola	cytosol	11.69	22.49
CDY40230	Canola	cytosol	11.69	20.43
CDY22940	Canola	plasma membrane	45.85	17.61
CDX73429	Canola	mitochondrion	6.46	17.07
CDX84569	Canola	mitochondrion	13.23	16.29
CDY17463	Canola	cytosol	14.77	16.11
CDY40226	Canola	cytosol	4.62	14.42
CDY48142	Canola	cytosol	8.62	14.21
CDY32785	Canola	cytosol	15.69	13.82
CDY72604	Canola	extracellular	12.31	13.61
CDY52958	Canola	cytosol	8.31	13.3
CDY67485	Canola	cytosol	14.77	13.26
CDX78281	Canola	cytosol	12.92	13.12
CDX73428	Canola	cytosol, extracellular, plasma membrane	12.31	12.5
CDY01651	Canola	mitochondrion	12.62	12.13
CDY41221	Canola	cytosol	12.0	11.93
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	15.08	11.56
CDY23937	Canola	mitochondrion	13.54	11.37
CDY64738	Canola	extracellular, nucleus, peroxisome	10.77	11.25
CDY40225	Canola	endoplasmic reticulum, extracellular	13.54	11.25
CDX96200	Canola	extracellular, plasma membrane	13.85	10.84
CDX78283	Canola	extracellular, plasma membrane	13.85	10.84
CDX74515	Canola	cytosol	15.08	10.45
CDX78279	Canola	cytosol	12.31	10.39
CDY16725	Canola	cytosol, extracellular, nucleus	8.0	10.16
CDX73430	Canola	extracellular, vacuole	12.92	10.12
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	14.15	9.96
CDX73432	Canola	extracellular, plasma membrane	12.92	9.86
CDX73431	Canola	endoplasmic reticulum, plasma membrane	12.62	9.86
CDY41224	Canola	cytosol, plasma membrane	12.31	9.69
CDX79668	Canola	cytosol	10.15	9.35
CDY40231	Canola	cytosol	12.0	9.29
CDY40228	Canola	cytosol, extracellular, nucleus	0.92	2.42
CDY41220	Canola	cytosol	0.92	1.89

Protein Annotations

EnsemblPlants:CDX91627	EnsemblPlantsGene:GSBRNA2T00153065001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212
PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387	ProteinID:CDX91627	ProteinID:CDX91627.1	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0004EECF92	MapMan:35.1	:	:	:

Description

BnaC02g15330D

Coordinates

chrLK031868:-:1218860..1220691

Molecular Weight (calculated)

37255.7 Da

IEP (calculated)

8.026

GRAVY (calculated)

0.155

Length

325 amino acids

Sequence
(BLAST)

001: MDKISGLSDD LLVKILSFVP TKVAVSTSVL SKRWECLWMW VPTFEDINTD IKDRYRVSVH KNLLSHRAPI IESLRLKFCL GSLQPEDIKQ WVVSRCVRVL
101: STTLVTLKLE GNKILVDVPP TVCLPSLATL QLLCVTYFDE ASLRMLLSNC PVLEDLVIER DTADDNAKGL VVVVPSLQRL SLQIDGGCCS YDGICRNWKR
201: QISLLILFNN EEESMYCSCI VFNQLQRLKL SICNDDWSKL LFRFLKDSPK LRVLNLDRAV NSLYGVILTL FLFYWDNEWS VTPNCLLKTL ETFEFSGCKG
301: RPQERAFLSF FFTNARCLKS TSILR

Best Arabidopsis Sequence Match ( AT5G56690.1 )
(BLAST)

001: MAEISGLPDD LLVKILAFLP TKVAISTSVL SKQWRFLWMW LPKLKYDDYD DITDGFNSVS AFQTYRDFIA KNLPLHRAPI IESLSLGFRC GTLQPEDLKS
101: WVEVAVSRSV RELSILAYYR NNYALSSSSL YTCKSLVTLK GFNIRVDVPP TVCLLPSLRT LELKRVRYLN EDSLRMLLSF CPVLEYLSIE RHDNDNLRGL
201: VVDVPSLRRL SLTSYTGCSS DDYVIVTPSL KYFKAFDYRS EISSYKIEKI PELEEADISI ERNPEKLFVY FKSIKCLSLQ VDFNSKEEPG YDSGIVFNHL
301: EELTPYINDA NWSKLLFRLL NDSPKLRVLE ISNSKSFYKE KIGEYLPVSW SKNQGSVPKC FLNSLETFRV KWYYSEEQED RDFLSLIFKH ARCLKSTSIL
401: HR

Arabidopsis Description

Putative FBD-associated F-box protein At5g56690 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJU3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.