CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35566	Canola	cytosol	23.82	73.72
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	70.28	71.46
CDX84780	Canola	cytosol	26.42	61.54
AT5G38580.1	Thale cress	cytosol	23.82	60.12
CDY41219	Canola	cytosol	21.46	53.85
CDY52958	Canola	cytosol	23.35	48.77
CDY23937	Canola	mitochondrion	43.87	48.06
AT5G38590.2	Thale cress	cytosol	46.23	47.8
CDY17463	Canola	cytosol	33.02	46.98
CDX73429	Canola	mitochondrion	13.44	46.34
CDY40230	Canola	cytosol	20.28	46.24
CDY72604	Canola	extracellular	29.48	42.52
CDX84569	Canola	mitochondrion	26.42	42.42
CDY01651	Canola	mitochondrion	33.73	42.31
CDY40225	Canola	endoplasmic reticulum, extracellular	38.68	41.94
CDY41224	Canola	cytosol, plasma membrane	40.33	41.4
CDX73430	Canola	extracellular, vacuole	40.33	41.2
CDX79668	Canola	cytosol	33.73	40.51
CDX96200	Canola	extracellular, plasma membrane	39.62	40.48
CDX78283	Canola	extracellular, plasma membrane	39.62	40.48
CDX74515	Canola	cytosol	44.58	40.3
CDY32785	Canola	cytosol	34.67	39.84
CDY67485	Canola	cytosol	33.96	39.78
CDX73431	Canola	endoplasmic reticulum, plasma membrane	38.68	39.42
CDX78281	Canola	cytosol	29.48	39.06
CDX73428	Canola	cytosol, extracellular, plasma membrane	29.25	38.75
CDY34607	Canola	cytosol	12.97	38.73
CDY40231	Canola	cytosol	38.21	38.57
CDY35372	Canola	cytosol	8.73	37.76
CDY40226	Canola	cytosol	9.2	37.5
CDY41221	Canola	cytosol	27.83	36.09
CDX78279	Canola	cytosol	30.42	33.51
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	36.08	33.12
CDY48142	Canola	cytosol	14.62	31.47
CDY64738	Canola	extracellular, nucleus, peroxisome	22.64	30.87
CDY16725	Canola	cytosol, extracellular, nucleus	17.92	29.69
CDX73432	Canola	extracellular, plasma membrane	29.01	28.87
CDY40228	Canola	cytosol, extracellular, nucleus	7.78	26.61
CDY22729	Canola	nucleus	14.15	26.32
CDY41220	Canola	cytosol	8.73	23.27
CDY38511	Canola	cytosol	17.22	17.8
CDY55715	Canola	cytosol, nucleus, plasma membrane	16.51	17.07
CDY53464	Canola	cytosol	16.27	16.91
CDY47798	Canola	plasma membrane	16.27	16.24
CDY09047	Canola	cytosol	16.51	15.52
CDX91627	Canola	cytosol	11.56	15.08
CDY66257	Canola	mitochondrion	14.62	14.42
CDY27080	Canola	cytosol	11.08	13.82
CDY22940	Canola	plasma membrane	21.46	10.76

Protein Annotations

EnsemblPlants:CDX87839	EnsemblPlantsGene:GSBRNA2T00147004001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf	ncoils:Coil	PANTHER:PTHR32212
PANTHER:PTHR32212:SF173	PFAM:PF08387	ProteinID:CDX87839	ProteinID:CDX87839.1	SMART:SM00579	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0004EF211C	MapMan:22.7.1.5	:	:	:

Description

BnaC06g09010D

Coordinates

chrLK031852:+:526015..528435

Molecular Weight (calculated)

48918.9 Da

IEP (calculated)

5.336

GRAVY (calculated)

-0.133

Length

424 amino acids

Sequence
(BLAST)

001: MDNISGLPDE LLVRILSLVP TEVAVSTCIL SKRWKFLWMY LPKLDFTDRD ESLLVLKDFI NKSLPLHRAP YLAIYVSWTF LILLIRKKTW FPTAYQKPFE
101: ALLSICPVLE DLEVWFREDE SIQEFTISVP SLRKLCLHIS YYGSSLERYE IDTPCLEYLQ LADWNDSPCL VKNMPKLKKA HVDVVSFAVK NVIRSVTSVK
201: HLTVCSEDVY GDGNVFDQLE HLTLCICKDD SSNLLAQFLK DSPNLRVLVI SQLDLHADLK TNEMGFWNQP SSVPECLLSS LRILNWEGYF GRPQDRDIAV
301: YILKNARHLR TATIWADTNE HDVPNLEMIK ELTLSSRASS TCELLESIKE LDQFMMKHRK DYVDLHRTTE HEKDSIEHEI TTAFIKACKE QIDILKNSIR
401: NEESNSKGWL GLAAAEDNFN ALIL

Best Arabidopsis Sequence Match ( AT5G38570.1 )
(BLAST)

001: MDNINGLPDD LLVKILSFVP TYVAVSTCVL SKRWEFLWMW LPNLEFVSPW DSRPGIVDFI NKKLPIHRAP VIERLCIHIN SNPHIKPEYI KRWIEIAVSH
101: YVRELQIDYH SKTKITLQLE AESYFIDGKY LQQLISGCPV LEDLSLRFCC NDNLREFTVI IPSLQSLSLF LFGNSNLNRY KIDTPSLKYL KLEDWNDPEH
201: YSWTNMPKLR EAYVDVESSN HLKTLIGSIT SVKHLTICCL EDYLYGDGFI FNHLEHLKLC MCPFDSSNLL GQLLKGSPNL QVLDIFEMKR NDIVCWNQPS
301: SVLECLLSSL KILNWSAYFG RPQDRDIAVY ILKNACHLKT ATFLTDKRIN DVRRLKMIKE LRLSPRASST CQLVFGEDF

Arabidopsis Description

Putative FBD-associated F-box protein At5g38570 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFW4]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.