Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G38570.1 | Thale cress | cytosol, nucleus, plasma membrane | 53.41 | 57.78 |
| Bra030421.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 56.34 | 55.4 |
| AT5G38580.1 | Thale cress | cytosol | 22.44 | 54.76 |
| AT5G38565.1 | Thale cress | cytosol, peroxisome, plastid | 44.39 | 52.15 |
| AT4G10410.1 | Thale cress | cytosol, plasma membrane, plastid | 33.17 | 51.71 |
| AT4G10400.1 | Thale cress | cytosol | 51.46 | 51.59 |
| AT4G09920.1 | Thale cress | cytosol, plasma membrane, plastid | 38.54 | 50.0 |
| AT4G10420.1 | Thale cress | extracellular, golgi, nucleus | 39.27 | 50.0 |
| CDY35566 | Canola | cytosol | 16.34 | 48.91 |
| CDY52958 | Canola | cytosol | 24.15 | 48.77 |
| AT3G54910.2 | Thale cress | cytosol | 43.17 | 47.45 |
| CDX87839 | Canola | cytosol, endoplasmic reticulum, plastid | 47.8 | 46.23 |
| AT4G15075.1 | Thale cress | cytosol | 13.66 | 33.33 |
| AT5G56700.2 | Thale cress | cytosol | 20.24 | 23.06 |
| AT5G11370.1 | Thale cress | cytosol, extracellular | 14.88 | 19.61 |
| AT2G26860.2 | Thale cress | cytosol | 18.78 | 19.01 |
| AT4G00315.1 | Thale cress | cytosol | 20.0 | 18.59 |
| AT5G60610.1 | Thale cress | cytosol | 17.07 | 18.04 |
| AT5G62970.1 | Thale cress | cytosol | 19.02 | 17.37 |
| AT1G55660.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 20.49 | 17.07 |
| AT5G56690.1 | Thale cress | endoplasmic reticulum | 16.59 | 16.92 |
| AT1G19410.1 | Thale cress | cytosol | 17.56 | 16.55 |
| AT5G56410.1 | Thale cress | cytosol | 18.54 | 15.11 |
| AT4G15060.1 | Thale cress | cytosol | 12.2 | 9.28 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:833848 | ProteinID:AED94338.1 | ProteinID:AED94339.1 | ArrayExpress:AT5G38590 |
| EnsemblPlantsGene:AT5G38590 | RefSeq:AT5G38590 | TAIR:AT5G38590 | RefSeq:AT5G38590-TAIR-G | EnsemblPlants:AT5G38590.2 | TAIR:AT5G38590.2 |
| Unigene:At.28770 | ProteinID:BAB10149.1 | EMBL:BT010159 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005777 | GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_2 | RefSeq:NP_198675.2 | RefSeq:NP_974861.1 | PFAM:PF00646 | PFAM:PF07723 | PFAM:PF08387 |
| PO:PO:0000293 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | UniProt:Q9FFW2 | SMART:SM00579 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | UniParc:UPI00000A4393 | : | : | : | : |
Description
FBD-associated F-box protein At5g38590 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFW2]
Coordinates
chr5:-:15451910..15453928
Molecular Weight (calculated)
47115.1 Da
IEP (calculated)
5.623
GRAVY (calculated)
-0.057
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKINGLPDD LLVKILSYVP TDIAVSTSIL SKRWEFLWMW LPNLDYTSRW CRKPGDVGLR DFIHKNLPLH RAPVIESLRF HSNSPDIKPE DIRRWIEIAV
101: SRHVHDLDID HFSENENIFL SSFFACKSLV TLKLRSVTLR DIPSMVCLPS LKTLLLDNVS FVEGKSLQEL LSICPVLEDL SVYCDDYENT KELTIVVPSL
201: LSLSLYIPDE WLLDGYWIDT PSLEYLKLED WNSCDHLSLI KNMPKLREAY VDAKCFLPKS VIESITSVKH LTICSKDGYG DGFVFNQLEH LTLCVCRGDS
301: PSLLGQLLKD SPNLRILEIS VMEDHVDDVG ISLDGWNQPS SVPECLLSSL QIFKWPQYLG RPEDRDIAVY ILKNARHLKK TTILADRCER FVTQRRMIKE
401: LLQALPARIC
101: SRHVHDLDID HFSENENIFL SSFFACKSLV TLKLRSVTLR DIPSMVCLPS LKTLLLDNVS FVEGKSLQEL LSICPVLEDL SVYCDDYENT KELTIVVPSL
201: LSLSLYIPDE WLLDGYWIDT PSLEYLKLED WNSCDHLSLI KNMPKLREAY VDAKCFLPKS VIESITSVKH LTICSKDGYG DGFVFNQLEH LTLCVCRGDS
301: PSLLGQLLKD SPNLRILEIS VMEDHVDDVG ISLDGWNQPS SVPECLLSSL QIFKWPQYLG RPEDRDIAVY ILKNARHLKK TTILADRCER FVTQRRMIKE
401: LLQALPARIC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.