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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:
  • nucleus 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • cytosol 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT4G10410.1 Thale cress cytosol, plasma membrane, plastid 51.58 61.98
AT4G10400.1 Thale cress cytosol 77.22 59.66
AT4G10420.1 Thale cress extracellular, golgi, nucleus 46.2 45.34
AT3G54910.2 Thale cress cytosol 47.78 40.48
AT5G38590.2 Thale cress cytosol 50.0 38.54
AT5G38570.1 Thale cress cytosol, nucleus, plasma membrane 41.77 34.83
Bra029225.1-P Field mustard cytosol 31.65 34.72
AT5G38565.1 Thale cress cytosol, peroxisome, plastid 36.39 32.95
CDY64738 Canola extracellular, nucleus, peroxisome 29.75 30.23
AT5G38580.1 Thale cress cytosol 6.65 12.5
AT4G15075.1 Thale cress cytosol 6.33 11.9
AT5G56700.2 Thale cress cytosol 12.03 10.56
AT5G60610.1 Thale cress cytosol 11.71 9.54
AT5G62970.1 Thale cress cytosol 12.97 9.13
AT5G11370.1 Thale cress cytosol, extracellular 8.54 8.68
AT2G26860.2 Thale cress cytosol 11.08 8.64
AT4G00315.1 Thale cress cytosol 10.76 7.71
AT5G56690.1 Thale cress endoplasmic reticulum 9.49 7.46
AT1G55660.1 Thale cress endoplasmic reticulum, extracellular, plasma membrane 11.08 7.11
AT5G56410.1 Thale cress cytosol 10.76 6.76
AT1G19410.1 Thale cress cytosol 8.86 6.44
AT4G15060.1 Thale cress cytosol 10.13 5.94
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1EntrezGene:826581ProteinID:AEE82812.1ProteinID:ANM67647.1ArrayExpress:AT4G09920
EnsemblPlantsGene:AT4G09920RefSeq:AT4G09920TAIR:AT4G09920RefSeq:AT4G09920-TAIR-GEnsemblPlants:AT4G09920.1TAIR:AT4G09920.1
Unigene:At.54246ProteinID:CAB39616.1ProteinID:CAB78115.1InterPro:F-box-like_dom_sfGO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0008150InterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rpt_2
RefSeq:NP_001329465.1RefSeq:NP_192730.2PFAM:PF07723PO:PO:0000293PANTHER:PTHR32212PANTHER:PTHR32212:SF173
UniProt:Q9T0F1SUPFAM:SSF52047SUPFAM:SSF81383UniParc:UPI0000162A0E::
Description
F-box protein At4g09920 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0F1]
Coordinates
chr4:+:6224530..6225905
Molecular Weight (calculated)
36580.1 Da
IEP (calculated)
8.865
GRAVY (calculated)
0.098
Length
316 amino acids
Sequence
(BLAST)
001: MDRIIGLPDE VLVKILSFVP TKVAVSTSIL SKRWEFLWMW LTKLKFGSKR YSESEFKRLQ CFLDRNLPLH RAPVIESFRL VLSDSHFKPE DIRMWVVVAV
101: SRYIRELKIY SSHYGEKQNI LPSSLYTCKS LVILKLDGGV LLDVPRMVCL PSLKTLELKG VRYFKQGSLQ RLLCNCPVLE DLFVLLLRCD DIGMFIVIVP
201: SLQRLSLYLS PRCNLEGFVI VLDTPLEYFK LVDRNYDRHP YMIENMPKLT SAYVEVISAD LKSLVESITS VKYLTIFSEN YDDFVFPWNQ PSTVPKCFCP
301: VYKSSPVYKS SPGQNT
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.