Factsheet for AT5G56690.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 3
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G56700.2	Thale cress	cytosol	51.99	58.06
Bra022582.1-P	Field mustard	cytosol	53.48	54.02
CDY27080	Canola	cytosol	44.78	52.94
CDX91627	Canola	cytosol	42.29	52.31
AT5G60610.1	Thale cress	cytosol	49.25	51.03
AT2G26860.2	Thale cress	cytosol	49.25	48.89
AT4G00315.1	Thale cress	cytosol	46.77	42.63
AT5G62970.1	Thale cress	cytosol	43.28	38.75
AT1G55660.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	45.77	37.4
AT5G56410.1	Thale cress	cytosol	43.28	34.59
AT1G19410.1	Thale cress	cytosol	36.57	33.79
AT4G15060.1	Thale cress	cytosol	40.8	30.43
AT5G11370.1	Thale cress	cytosol, extracellular	22.14	28.62
AT4G15075.1	Thale cress	cytosol	11.69	27.98
AT5G38580.1	Thale cress	cytosol	11.69	27.98
AT4G10420.1	Thale cress	extracellular, golgi, nucleus	14.43	18.01
AT3G54910.2	Thale cress	cytosol	15.92	17.16
AT5G38590.2	Thale cress	cytosol	16.92	16.59
AT5G38565.1	Thale cress	cytosol, peroxisome, plastid	13.93	16.05
AT5G38570.1	Thale cress	cytosol, nucleus, plasma membrane	14.93	15.83
AT4G10410.1	Thale cress	cytosol, plasma membrane, plastid	9.7	14.83
AT4G10400.1	Thale cress	cytosol	14.68	14.43
AT4G09920.1	Thale cress	cytosol, plasma membrane, plastid	7.46	9.49

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:835770	ProteinID:AED96796.1	ArrayExpress:AT5G56690	EnsemblPlantsGene:AT5G56690
RefSeq:AT5G56690	TAIR:AT5G56690	RefSeq:AT5G56690-TAIR-G	EnsemblPlants:AT5G56690.1	TAIR:AT5G56690.1	Unigene:At.55591
ProteinID:BAB09887.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2
RefSeq:NP_200480.1	PFAM:PF00646	PFAM:PF07723	PFAM:PF08387	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173
UniProt:Q9FJU3	SMART:SM00256	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00000A76AB	:

Description

Putative FBD-associated F-box protein At5g56690 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJU3]

Coordinates

chr5:+:22939723..22941099

Molecular Weight (calculated)

46616.0 Da

IEP (calculated)

7.699

GRAVY (calculated)

-0.187

Length

402 amino acids

Sequence
(BLAST)

001: MAEISGLPDD LLVKILAFLP TKVAISTSVL SKQWRFLWMW LPKLKYDDYD DITDGFNSVS AFQTYRDFIA KNLPLHRAPI IESLSLGFRC GTLQPEDLKS
101: WVEVAVSRSV RELSILAYYR NNYALSSSSL YTCKSLVTLK GFNIRVDVPP TVCLLPSLRT LELKRVRYLN EDSLRMLLSF CPVLEYLSIE RHDNDNLRGL
201: VVDVPSLRRL SLTSYTGCSS DDYVIVTPSL KYFKAFDYRS EISSYKIEKI PELEEADISI ERNPEKLFVY FKSIKCLSLQ VDFNSKEEPG YDSGIVFNHL
301: EELTPYINDA NWSKLLFRLL NDSPKLRVLE ISNSKSFYKE KIGEYLPVSW SKNQGSVPKC FLNSLETFRV KWYYSEEQED RDFLSLIFKH ARCLKSTSIL
401: HR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.