Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G38580.1 | Thale cress | cytosol | 31.55 | 31.55 |
| Bra039567.1-P | Field mustard | cytosol, golgi, mitochondrion, plastid | 51.19 | 22.4 |
| CDY47798 | Canola | plasma membrane | 51.79 | 20.47 |
| AT4G00315.1 | Thale cress | cytosol | 51.79 | 19.73 |
| Bra039568.1-P | Field mustard | extracellular, golgi | 46.43 | 18.89 |
| AT5G11370.1 | Thale cress | cytosol, extracellular | 33.93 | 18.33 |
| AT4G10420.1 | Thale cress | extracellular, golgi, nucleus | 34.52 | 18.01 |
| AT1G55660.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 51.19 | 17.48 |
| AT5G56700.2 | Thale cress | cytosol | 33.93 | 15.83 |
| AT3G54910.2 | Thale cress | cytosol | 34.52 | 15.55 |
| AT4G10400.1 | Thale cress | cytosol | 36.31 | 14.91 |
| AT5G38570.1 | Thale cress | cytosol, nucleus, plasma membrane | 33.33 | 14.78 |
| AT5G62970.1 | Thale cress | cytosol | 36.9 | 13.81 |
| AT5G38565.1 | Thale cress | cytosol, peroxisome, plastid | 28.57 | 13.75 |
| AT5G38590.2 | Thale cress | cytosol | 33.33 | 13.66 |
| AT5G60610.1 | Thale cress | cytosol | 30.36 | 13.14 |
| AT2G26860.2 | Thale cress | cytosol | 30.36 | 12.59 |
| AT1G19410.1 | Thale cress | cytosol | 31.55 | 12.18 |
| AT5G56690.1 | Thale cress | endoplasmic reticulum | 27.98 | 11.69 |
| AT4G15060.1 | Thale cress | cytosol | 35.71 | 11.13 |
| AT5G56410.1 | Thale cress | cytosol | 32.14 | 10.74 |
| AT4G10410.1 | Thale cress | cytosol, plasma membrane, plastid | 16.67 | 10.65 |
| CDY22940 | Canola | plasma membrane | 51.19 | 10.17 |
| AT4G09920.1 | Thale cress | cytosol, plasma membrane, plastid | 11.9 | 6.33 |
Protein Annotations
| ArrayExpress:AT4G15075 | EnsemblPlants:AT4G15075.1 | EnsemblPlantsGene:AT4G15075 | EntrezGene:827171 | GO:GO:0008150 | InterPro:FBD |
| PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | PFAM:PF08387 | ProteinID:AEE83551.1 | RefSeq:AT4G15075 | RefSeq:AT4G15075-TAIR-G |
| RefSeq:NP_680691.1 | SEG:seg | SMART:SM00579 | TAIR:AT4G15075 | TAIR:AT4G15075.1 | Unigene:At.54328 |
| UniParc:UPI0000162A49 | UniProt:F4JJD2 | MapMan:35.1 | : | : | : |
Description
FBD-like domain family protein [Source:UniProtKB/TrEMBL;Acc:F4JJD2]
Coordinates
chr4:+:8607777..8608519
Molecular Weight (calculated)
19153.1 Da
IEP (calculated)
4.542
GRAVY (calculated)
-0.171
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKLGEADIE TTYPDINKFV TSITSVNRLS LCVRVNSAEE LENLKLCPCD ANWSKLLVRF LENSHNLLEL EIDLNDDHID SCVVDPLVCL ENQLNYVPEC
101: LRSNLETKWT GMHGSQKEID MLKYILRNAC CLKTATILFK STPDTEDKHK TMIQELLLSS TTCQLVFD
101: LRSNLETKWT GMHGSQKEID MLKYILRNAC CLKTATILFK STPDTEDKHK TMIQELLLSS TTCQLVFD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.