CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22729	Canola	nucleus	28.94	53.95
AT4G15075.1	Thale cress	cytosol	20.47	51.79
CDY09047	Canola	cytosol	49.88	47.01
CDY22940	Canola	plasma membrane	86.35	43.38
CDY27080	Canola	cytosol	33.88	42.35
CDX91627	Canola	cytosol	31.53	41.23
CDY34607	Canola	cytosol	13.65	40.85
CDY38511	Canola	cytosol	39.29	40.73
CDY53464	Canola	cytosol	38.82	40.44
CDY55715	Canola	cytosol, nucleus, plasma membrane	38.82	40.24
CDY35372	Canola	cytosol	8.94	38.78
CDY35566	Canola	cytosol	12.0	37.23
AT4G15060.1	Thale cress	cytosol	45.41	35.81
CDY41219	Canola	cytosol	13.88	34.91
CDX84780	Canola	cytosol	14.12	32.97
CDY40230	Canola	cytosol	13.41	30.65
CDY66257	Canola	mitochondrion	30.82	30.47
CDY17463	Canola	cytosol	19.29	27.52
CDX73429	Canola	mitochondrion	7.76	26.83
CDY40226	Canola	cytosol	6.35	25.96
CDY72604	Canola	extracellular	17.18	24.83
CDX84569	Canola	mitochondrion	15.29	24.62
CDY32785	Canola	cytosol	20.0	23.04
CDX78281	Canola	cytosol	17.18	22.81
CDY41221	Canola	cytosol	17.41	22.63
CDX73428	Canola	cytosol, extracellular, plasma membrane	16.94	22.5
CDY67485	Canola	cytosol	19.06	22.38
CDY52958	Canola	cytosol	9.65	20.2
CDY64738	Canola	extracellular, nucleus, peroxisome	14.12	19.29
CDY40225	Canola	endoplasmic reticulum, extracellular	16.71	18.16
CDX96200	Canola	extracellular, plasma membrane	17.41	17.83
CDX78283	Canola	extracellular, plasma membrane	17.41	17.83
CDY23937	Canola	mitochondrion	16.24	17.83
CDY41224	Canola	cytosol, plasma membrane	16.94	17.43
CDY40231	Canola	cytosol	16.94	17.14
CDX73430	Canola	extracellular, vacuole	16.71	17.11
CDX78279	Canola	cytosol	15.29	16.88
CDX73431	Canola	endoplasmic reticulum, plasma membrane	16.47	16.83
CDY16725	Canola	cytosol, extracellular, nucleus	9.88	16.41
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	16.24	16.27
CDY01651	Canola	mitochondrion	12.94	16.27
CDX79668	Canola	cytosol	13.41	16.15
CDX74515	Canola	cytosol	17.41	15.78
CDX73432	Canola	extracellular, plasma membrane	14.35	14.32
CDY48142	Canola	cytosol	6.59	14.21
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	15.06	13.85
CDY40228	Canola	cytosol, extracellular, nucleus	4.0	13.71
CDY41220	Canola	cytosol	0.24	0.63

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078IF22	EnsemblPlants:CDY47798	ProteinID:CDY47798	ProteinID:CDY47798.1
InterPro:F-box-like_dom_sf	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00088217001
InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF08387	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	SMART:SM00579
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE3056	SEG:seg	:	:

Description

BnaC01g22540DBnaC01g22540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IF22]

Coordinates

chrLK032736:-:65535..67035

Molecular Weight (calculated)

49098.5 Da

IEP (calculated)

4.945

GRAVY (calculated)

-0.022

Length

425 amino acids

Sequence
(BLAST)

001: MDKISQLPDE LLLKVLLPLP TKVAANTSIL SKRWEFLWMW LPKLEYDHSM DERKSLIDFI TLNMPQHRAP VIESLRLNFS YGYEGSVTRE DIRMWVAIAV
101: TRFLRELSLD LYPNFESQTT KLPSSLYTCK SLVILKLEEG ILVDVPHQKS LHRLLSSCPV LEDLFVKHNG CESEHLETFS VIVPSLQRLT LKICRGSFFQ
201: ALVMNTPSLK YFKFTDYTCE HDDFSDIDFD FDYNGYSFYS DDMPKLEEME VDSTYLDTEN FVSLITYVKR LSLCLPDQAE KALYREGLVL SQLRHLKLCS
301: CTIKWSKLLV LFLKDSPNLQ ELVVHLTIDH TDICEDPPVC WENQLNCVPG CLLSSLGTFK WIGIYGSQKE LDLVKFVLRN ACCLKTATIL FRSWDSALEE
401: DELEMVIQDL SLSSRGSKDV KLVFV

Best Arabidopsis Sequence Match ( AT4G15060.2 )
(BLAST)

001: MSTVRESWLK PKKNIQTNLG DYEDMDKISR LPDDLLVKVL LFLPTKIAVS TSILSKRWEF LWMWLPKLEY HNTNYSASEE QRLRSFINLN LQLHRAPIIE
101: SLRLKFSLGR SIKPQNIKQW IIIAVFRCVR ELSINLFPLY CIENPAKLPS SLYISKSLVI LKLKDQILVD VPRMAYLPSL KYLLLKRVTY KDSNSLHQLL
201: SSCPVLKNLV VERDEYNHDE TLSITVSSLQ RLTLKISRGG SFDELVINTP SLKYFKLTDY LGECETELDD DSYSYVFKDM PKLEEAHIDS TYPDIGKFVR
301: SITSVKRLSL CVKVNAEEAL YREGICFKQL EHLKLCPCDS NWSKLLARLL KDSPNLRELE IKLNKDHKAS FDDPACLENQ LNYVVQSSIP SLERFTWTWI
401: YGSQNEIDYL EKLKKRLLLT NWQNLV

Arabidopsis Description

CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Re /.../omains containing protein (TAIR:AT1G55660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G15060]
SUBAcon: [cytosol,nucleus,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.