CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	93.38	92.03
CDY55715	Canola	cytosol, nucleus, plasma membrane	75.25	74.88
CDY35372	Canola	cytosol	15.69	65.31
CDY38511	Canola	cytosol	64.95	64.63
AT2G26860.2	Thale cress	cytosol	58.82	59.26
CDY27080	Canola	cytosol	42.89	51.47
CDX91627	Canola	cytosol	40.2	50.46
CDY34607	Canola	cytosol	16.67	47.89
CDY22729	Canola	nucleus	23.28	41.67
CDY66257	Canola	mitochondrion	40.93	38.84
CDY47798	Canola	plasma membrane	40.44	38.82
CDY35566	Canola	cytosol	12.25	36.5
CDY09047	Canola	cytosol	37.5	33.92
CDX84780	Canola	cytosol	14.22	31.87
CDY41219	Canola	cytosol	11.27	27.22
CDY40226	Canola	cytosol	6.86	26.92
CDY17463	Canola	cytosol	19.36	26.51
CDY40230	Canola	cytosol	11.76	25.81
CDX73429	Canola	mitochondrion	7.6	25.2
CDY52958	Canola	cytosol	12.25	24.63
CDY72604	Canola	extracellular	17.65	24.49
CDX84569	Canola	mitochondrion	15.2	23.48
CDX73428	Canola	cytosol, extracellular, plasma membrane	17.89	22.81
CDX78281	Canola	cytosol	17.4	22.19
CDY32785	Canola	cytosol	19.85	21.95
CDY67485	Canola	cytosol	19.36	21.82
CDY22940	Canola	plasma membrane	43.14	20.8
CDY41221	Canola	cytosol	16.42	20.49
CDY64738	Canola	extracellular, nucleus, peroxisome	13.97	18.33
CDX78279	Canola	cytosol	16.42	17.4
CDY23937	Canola	mitochondrion	16.42	17.31
CDY40225	Canola	endoplasmic reticulum, extracellular	16.42	17.14
CDX73430	Canola	extracellular, vacuole	17.16	16.87
CDY16725	Canola	cytosol, extracellular, nucleus	10.54	16.8
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	16.91	16.27
CDX74515	Canola	cytosol	18.38	15.99
CDY41224	Canola	cytosol, plasma membrane	16.18	15.98
CDX78283	Canola	extracellular, plasma membrane	16.18	15.9
CDX96200	Canola	extracellular, plasma membrane	16.18	15.9
CDY40231	Canola	cytosol	16.18	15.71
CDX73431	Canola	endoplasmic reticulum, plasma membrane	15.93	15.62
CDX79668	Canola	cytosol	12.99	15.01
CDY48142	Canola	cytosol	7.11	14.72
CDX73432	Canola	extracellular, plasma membrane	15.2	14.55
CDY01651	Canola	mitochondrion	11.76	14.2
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	15.44	13.64
CDY40228	Canola	cytosol, extracellular, nucleus	3.92	12.9
CDY41220	Canola	cytosol	0.49	1.26

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078IVL1	EnsemblPlants:CDY53464	ProteinID:CDY53464	ProteinID:CDY53464.1
InterPro:F-box-like_dom_sf	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00010783001
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF07723	PFAM:PF08387	PANTHER:PTHR32212
PANTHER:PTHR32212:SF173	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EF15C5	SEG:seg	:

Description

BnaA04g28050DBnaA04g28050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVL1]

Coordinates

chrLK033206:-:23391..24798

Molecular Weight (calculated)

46839.6 Da

IEP (calculated)

5.003

GRAVY (calculated)

0.045

Length

408 amino acids

Sequence
(BLAST)

001: MDRISGLSDE LLVRILTSVP TKVSVSTSIL SKRWEFLWTW VPKLEFVDNK YGSELAIRDF INKNLPLLKA PVIESFLLKC CSSFFQPEDI TRWVATTVSR
101: CIVELDIDCV YCWSGEPCLL LPSSLFTCES LVTLKLNGEM IMLDVPRTVS LPSLKTLHLG CVTYSKEDTF RLLLSYCPVL EDLVIRRSGR DKAKAIVVIC
201: PSLQRLTLPL DGGTSSSDEF VIVTPSLKYF NVEDYNARYS YFVAHMPKVE EADITVDEYL EMVFESITSV KRLSLCVLFD FEERYMYHDG IFFSQLEHLK
301: LGVSFDYWSK FLFRLLRDAP KLRVLKLYVY SGGRFKKYEP ISWNNDPSAV PTCVLESLET FEFADYRGMQ EERDFVSFII KNACHLKSST ITPCTRMETC
401: SSTDSSDD

Best Arabidopsis Sequence Match ( AT2G26860.2 )
(BLAST)

001: MDRISGLPDE LLVEILHCLP TKEVVSTSIL SKRWEFLWLW VPKLTFVMNH YESDLPIQDF ITKNLRLLKP QVIESFHLQC FSSSFKPEDI KHWVVTTISR
101: RVRELIINYC DLSWLDKPVV LLDLPNSLYT CTSLVTLKLI GHSIIVDVPR TVSLPCLKTL ELDSVAYSNE ESLRLLLSYC PVLEDLTIHR DMHDNVKTLV
201: IIVPSLLRLN LPIDGAYSCD GYVIVTPALK YLKVPGLYRE DFSYLLTHMP NVEEADLSVE QDVERLFESI TSVKRLSLFV LLDIEDESMY HNGIYFNQLE
301: HLNLHIYRDN WSKLLVRLLE DSPKLRVLKI VVDGEPSFDE EFEHVSWIYN DESSVPKCLL DSLEVFEFAG YTRRPEERDF VSFILKHACH LKSSSISRLS
401: CYVLE

Arabidopsis Description

FBD-associated F-box protein At2g26860 [Source:UniProtKB/Swiss-Prot;Acc:Q84X02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.