CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	43.85	96.61
CDY47798	Canola	plasma membrane	43.38	86.35
Bra039568.1-P	Field mustard	extracellular, golgi	39.83	81.6
CDY22729	Canola	nucleus	15.37	57.02
AT4G15075.1	Thale cress	cytosol	10.17	51.19
CDY09047	Canola	cytosol	25.41	47.67
CDY27080	Canola	cytosol	18.91	47.06
CDY40228	Canola	cytosol, extracellular, nucleus	6.74	45.97
CDX91627	Canola	cytosol	17.61	45.85
CDX84569	Canola	mitochondrion	14.3	45.83
CDY38511	Canola	cytosol	21.16	43.66
CDY55715	Canola	cytosol, nucleus, plasma membrane	20.92	43.17
CDY53464	Canola	cytosol	20.8	43.14
CDY35372	Canola	cytosol	4.85	41.84
CDY48142	Canola	cytosol	9.69	41.62
CDY72604	Canola	extracellular	14.3	41.16
CDY34607	Canola	cytosol	6.86	40.85
AT4G15060.1	Thale cress	cytosol	25.41	39.89
CDX78281	Canola	cytosol	14.89	39.38
CDY41219	Canola	cytosol	7.68	38.46
CDY41221	Canola	cytosol	14.78	38.23
CDX73428	Canola	cytosol, extracellular, plasma membrane	14.07	37.19
CDY16725	Canola	cytosol, extracellular, nucleus	11.11	36.72
CDY35566	Canola	cytosol	5.79	35.77
CDX84780	Canola	cytosol	7.68	35.71
CDY40226	Canola	cytosol	4.14	33.65
CDX79668	Canola	cytosol	13.71	32.86
CDY66257	Canola	mitochondrion	16.67	32.79
CDY40230	Canola	cytosol	7.09	32.26
CDY40225	Canola	endoplasmic reticulum, extracellular	14.89	32.23
CDY32785	Canola	cytosol	13.83	31.71
CDY67485	Canola	cytosol	13.36	31.22
CDY52958	Canola	cytosol	7.45	31.03
CDY41224	Canola	cytosol, plasma membrane	15.01	30.75
CDY17463	Canola	cytosol	10.76	30.54
CDX78279	Canola	cytosol	13.71	30.13
CDX73430	Canola	extracellular, vacuole	14.78	30.12
CDX78283	Canola	extracellular, plasma membrane	14.66	29.88
CDX96200	Canola	extracellular, plasma membrane	14.66	29.88
CDX73429	Canola	mitochondrion	4.26	29.27
CDX73431	Canola	endoplasmic reticulum, plasma membrane	14.3	29.09
CDY40231	Canola	cytosol	14.3	28.81
CDY41220	Canola	cytosol	5.32	28.3
CDY64738	Canola	extracellular, nucleus, peroxisome	9.81	26.69
CDY23937	Canola	mitochondrion	11.35	24.81
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	12.65	23.16
CDX74515	Canola	cytosol	12.17	21.96
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	10.76	21.46
CDX73432	Canola	extracellular, plasma membrane	10.76	21.36
CDY01651	Canola	mitochondrion	8.39	21.01

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078G943	EnsemblPlants:CDY22940	ProteinID:CDY22940	ProteinID:CDY22940.1
InterPro:F-box-like_dom_sf	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00021327001
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF07723	PFAM:PF08387	PANTHER:PTHR32212
PANTHER:PTHR32212:SF173	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE6690	SEG:seg

Description

BnaA01g18780DBnaA01g18780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G943]

Coordinates

chrLK032137:-:595042..604168

Molecular Weight (calculated)

97140.8 Da

IEP (calculated)

5.638

GRAVY (calculated)

-0.054

Length

846 amino acids

Sequence
(BLAST)

001: MDKISQLPDE LLLKVLLFLP TKVAVSTSIL SIQAMGSLSR FINLNMPLHR APVIESLRLN FSHGYTGSVT PEDVRQWVAL AVTRFLRELS LDLTSEDNPT
101: KLPSSLYTCK SLVILELKGS NLVDVHRTSC LPSLKTLLLQ GVLYADQKSL HKLLSSCPVL EDLFVEQYGC ESEHFLEAVS VIVPSLQRLT LKLCRGYFFH
201: RLVINTPSLK YFKIEDYTYE HTNGIDDDDY SFYSDDMPKL EEMEVHSTYL DIQNFVSLIT HVKRLSLCLP DQAENALYRE GIVLSQLRRL KLCSCTINWS
301: KLLVRLLKDS PNLQELEIHL DGDHTNICED PPVCWENELA CVPDCLLSSL QTFKWTRIYG SPKEVDLVKY VLRNARCLKT PTIFFKKFNQ KLKEIIMNQD
401: MDKISPLPDE LLLKVLLLLP TKVAASTSIL SKRWEFLWMW LPKLAYDDSM DEHNSLLDFI TLNMPQHRAP VIESLRLSFS YGYKGSVTRE DIRMWVAIAV
501: TRFLRELSLD LTFEVNPTKL PSSMYTCKSL VILELEEGIL VDVPRTTCLP SLKTLLLQGV TYADQKSLHR LLSSCPVLDD LFVKHNGCES EHLKTFSVIV
601: PSLQRLTLKI CRGSFFKALV MNTPSLKYFK FTDYTCEHHD FSDTDIDFDF DYNGYSFYSD DMPKLEEMEV DSTYLDTENF VSLITHVKRL SLCLPDQAEN
701: EKALYREGIV FSQLRRLKLC SCTINWSKLL VRLLKDSPNL QELEIHLDGD HTNICEDPPV CWENELACVP DCLLSSLQTF KWTRIYGSQK EVDLVKYVLS
801: NARCLKTATI LFRSSDSALE EDELEMVIQD LSLSSRGSKY VKLVFV

Best Arabidopsis Sequence Match ( AT4G15060.1 )
(BLAST)

001: MPNLEEADIS STYPDIYKFV RSVTSVKRLS LCIRVNAEEA LYPDGIVFNQ LENLKLCPCD SNWSKLFVRL LKYSPNLREL EVSLNEGHTK CCVDPQVSLE
101: NQLNFVPECL LSSLQTFKWT GIHGSLKVMD LAKYILRNAR CLKTATILFQ PALETERETM IQELLLSFRD MDKISRLPDD LLVKVLLFLP TKIAVSTSIL
201: SKRWEFLWMW LPKLEYHNTN YSASEEQRLR SFINLNLQLH RAPIIESLRL KFSLGRSIKP QNIKQWIIIA VFRCVRELSI NLFPLYCIEN PAKLPSSLYI
301: SKSLVILKLK DQILVDVPRM AYLPSLKYLL LKRVTYKDSN SLHQLLSSCP VLKNLVVERD EYNHDETLSI TVSSLQRLTL KISRGGSFDE LVINTPSLKY
401: FKLTDYLGEC ETELDDDSYS YVFKDMPKLE EAHIDSTYPD IGKFVRSITS VKRLSLCVKV NAEEDSPNLR ELEIKLNKDH KASFDDPACL ENQLNYVVQS
501: SIPSLERFTW TWIYGSQNEI DYLEKLKKRL LLTNWQNLV

Arabidopsis Description

CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Re /.../omains containing protein (TAIR:AT1G55660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G15060]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.