CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72604	Canola	extracellular	50.13	66.67
CDY41219	Canola	cytosol	27.11	62.72
CDX73431	Canola	endoplasmic reticulum, plasma membrane	65.98	62.02
CDX96200	Canola	extracellular, plasma membrane	65.47	61.69
CDX78283	Canola	extracellular, plasma membrane	65.47	61.69
CDY40228	Canola	cytosol, extracellular, nucleus	19.44	61.29
CDY41224	Canola	cytosol, plasma membrane	64.71	61.26
CDX73430	Canola	extracellular, vacuole	64.45	60.72
CDX73428	Canola	cytosol, extracellular, plasma membrane	49.62	60.62
CDX78281	Canola	cytosol	49.62	60.62
CDY41221	Canola	cytosol	50.38	60.24
CDY40231	Canola	cytosol	62.92	58.57
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	67.26	56.93
CDY17463	Canola	cytosol	43.22	56.71
CDX78279	Canola	cytosol	54.73	55.58
CDX84569	Canola	mitochondrion	37.08	54.92
CDY40230	Canola	cytosol	26.09	54.84
AT3G54910.2	Thale cress	cytosol	51.92	54.42
CDY32785	Canola	cytosol	50.64	53.66
CDY67485	Canola	cytosol	49.62	53.59
CDY41220	Canola	cytosol	21.74	53.46
CDX73429	Canola	mitochondrion	16.62	52.85
CDX79668	Canola	cytosol	47.06	52.12
CDY40226	Canola	cytosol	13.55	50.96
CDX84780	Canola	cytosol	23.27	50.0
CDY23937	Canola	mitochondrion	43.48	43.93
CDY48142	Canola	cytosol	20.97	41.62
CDY01651	Canola	mitochondrion	35.55	41.12
CDX73432	Canola	extracellular, plasma membrane	43.99	40.38
CDY35566	Canola	cytosol	13.81	39.42
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	41.94	38.68
CDY16725	Canola	cytosol, extracellular, nucleus	25.06	38.28
CDY52958	Canola	cytosol	19.18	36.95
CDX74515	Canola	cytosol	43.48	36.25
CDY35372	Canola	cytosol	8.95	35.71
CDY64738	Canola	extracellular, nucleus, peroxisome	27.62	34.73
CDY34607	Canola	cytosol	12.28	33.8
CDY22729	Canola	nucleus	15.86	27.19
CDY55715	Canola	cytosol, nucleus, plasma membrane	18.67	17.8
CDY47798	Canola	plasma membrane	18.16	16.71
CDY53464	Canola	cytosol	17.14	16.42
CDY09047	Canola	cytosol	18.67	16.19
CDY38511	Canola	cytosol	16.37	15.61
CDY22940	Canola	plasma membrane	32.23	14.89
CDY66257	Canola	mitochondrion	16.37	14.88
CDX91627	Canola	cytosol	11.25	13.54
CDY27080	Canola	cytosol	10.74	12.35

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078HNU3	EnsemblPlants:CDY40225	ProteinID:CDY40225	ProteinID:CDY40225.1
InterPro:F-box-like_dom_sf	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00069375001
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF07723	PFAM:PF08387	PANTHER:PTHR32212
PANTHER:PTHR32212:SF173	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EDCD94	SEG:seg

Description

BnaA09g35070DBnaA09g35070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNU3]

Coordinates

chrLK032466:+:170351..172140

Molecular Weight (calculated)

44326.2 Da

IEP (calculated)

6.640

GRAVY (calculated)

0.048

Length

391 amino acids

Sequence
(BLAST)

001: MDRISGLSDE LLVKILLLVP TKVAVSTSIL SKRWEYLWMW LPKLDYVSGS ATDYGHSYCS EPESSRLRRF LDHNLPLHRA PVIESFRLEL LNILPSNLFT
101: CKSLVILKLA GGMLLNVPRM VSLPSLKTLK LQRVKYFKGK TLQRLLSNCP VLEDLVLDLP KGESTGKLTV VVPSLQRLSL DIPSAHDIVG YVIKTPDLKY
201: FKLVDDNDKS HYCLIEHMPN LSEAHLDVAL PDIKSIIGSI TSVRRLAICS AAMFDEGFVL NQLEHLKVCV CRDHSSNQIF RLLKSSTILQ ELNLFSMEDH
301: FPQFMDNWNE PSTVPECLLS SLQSLNWSLY GGEPQERDIV IYILEHAVHL KTATIESSEG QFSKFEMLQE LALSSRASTT CKLMFECPFE L

Best Arabidopsis Sequence Match ( AT3G54910.1 )
(BLAST)

001: MWLPKLKYGH RDSSECKRLE CFLDKNLPLH RAPVIESFRL YLIDSKCTPE NIKMWVVIAV SHCLRELEVI YSSYPEKPNI LPSNLYTCKS LVILELCGEI
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD

Arabidopsis Description

At3g54910 [Source:UniProtKB/TrEMBL;Acc:Q501B7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.