Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035845.1-P | Field mustard | cytosol, extracellular, nucleus | 90.86 | 69.92 |
| CDY16725 | Canola | cytosol, extracellular, nucleus | 90.86 | 69.92 |
| CDY40228 | Canola | cytosol, extracellular, nucleus | 21.83 | 34.68 |
| CDX84569 | Canola | mitochondrion | 42.13 | 31.44 |
| CDY41220 | Canola | cytosol | 24.87 | 30.82 |
| CDY72604 | Canola | extracellular | 41.62 | 27.89 |
| CDY41221 | Canola | cytosol | 42.64 | 25.69 |
| CDX73428 | Canola | cytosol, extracellular, plasma membrane | 41.62 | 25.62 |
| CDX78281 | Canola | cytosol | 41.62 | 25.62 |
| CDX84780 | Canola | cytosol | 20.3 | 21.98 |
| CDY41224 | Canola | cytosol, plasma membrane | 44.67 | 21.31 |
| CDY52958 | Canola | cytosol | 21.83 | 21.18 |
| CDY40225 | Canola | endoplasmic reticulum, extracellular | 41.62 | 20.97 |
| CDX79668 | Canola | cytosol | 37.06 | 20.68 |
| CDX73431 | Canola | endoplasmic reticulum, plasma membrane | 43.65 | 20.67 |
| CDY35566 | Canola | cytosol | 14.21 | 20.44 |
| CDX78283 | Canola | extracellular, plasma membrane | 42.64 | 20.24 |
| CDX96200 | Canola | extracellular, plasma membrane | 42.64 | 20.24 |
| CDX73430 | Canola | extracellular, vacuole | 41.62 | 19.76 |
| CDX73429 | Canola | mitochondrion | 12.18 | 19.51 |
| CDX78279 | Canola | cytosol | 38.07 | 19.48 |
| CDY32785 | Canola | cytosol | 35.53 | 18.97 |
| CDY41219 | Canola | cytosol | 16.24 | 18.93 |
| CDY40231 | Canola | cytosol | 40.1 | 18.81 |
| CDY67485 | Canola | cytosol | 33.5 | 18.23 |
| CDY01651 | Canola | mitochondrion | 27.41 | 15.98 |
| CDY23937 | Canola | mitochondrion | 30.96 | 15.76 |
| CDY34607 | Canola | cytosol | 11.17 | 15.49 |
| CDX78280 | Canola | extracellular, golgi, mitochondrion, plastid | 36.04 | 15.37 |
| CDX87839 | Canola | cytosol, endoplasmic reticulum, plastid | 31.47 | 14.62 |
| CDY40230 | Canola | cytosol | 13.71 | 14.52 |
| CDY64738 | Canola | extracellular, nucleus, peroxisome | 22.84 | 14.47 |
| CDY17463 | Canola | cytosol | 20.3 | 13.42 |
| CDY35372 | Canola | cytosol | 6.6 | 13.27 |
| CDX74515 | Canola | cytosol | 30.96 | 13.01 |
| CDX73432 | Canola | extracellular, plasma membrane | 25.89 | 11.97 |
| CDY22729 | Canola | nucleus | 12.69 | 10.96 |
| CDY22940 | Canola | plasma membrane | 41.62 | 9.69 |
| CDY27080 | Canola | cytosol | 15.23 | 8.82 |
| CDX91627 | Canola | cytosol | 14.21 | 8.62 |
| CDY40226 | Canola | cytosol | 4.06 | 7.69 |
| CDY38511 | Canola | cytosol | 15.23 | 7.32 |
| CDY53464 | Canola | cytosol | 14.72 | 7.11 |
| CDY55715 | Canola | cytosol, nucleus, plasma membrane | 14.72 | 7.07 |
| CDY09047 | Canola | cytosol | 15.74 | 6.87 |
| CDY47798 | Canola | plasma membrane | 14.21 | 6.59 |
| CDY66257 | Canola | mitochondrion | 12.69 | 5.81 |
Protein Annotations
| EnsemblPlants:CDY48142 | EnsemblPlantsGene:GSBRNA2T00088939001 | Gene3D:3.80.10.10 | InterPro:FBD | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| ncoils:Coil | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | PFAM:PF08387 | ProteinID:CDY48142 | ProteinID:CDY48142.1 |
| SUPFAM:SSF52047 | UniParc:UPI0004EEEC85 | UniProt:A0A078IDJ5 | MapMan:35.1 | : | : |
Description
BnaCnng15840DBnaCnng15840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDJ5]
Coordinates
chrLK032755:-:126401..127701
Molecular Weight (calculated)
22929.8 Da
IEP (calculated)
5.771
GRAVY (calculated)
-0.218
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLHRAPYSN EKPNILPSRL YTCKSLVILK LRGEIRLDVP RLSCLPSLKT FELILDKYFQ GGPLRRLLSI CPVLENLLVN CGWDDYDKGL ITVTVPSLQR
101: LTLYLHSETE GDSSNLLARL LEDSPNLRVL DIFEIDHDDR DYEELISTTV RTVRESVLSN LRTFNWSRYF ERRPQEMDLA VYILGEKWCL KDCNNLV
101: LTLYLHSETE GDSSNLLARL LEDSPNLRVL DIFEIDHDDR DYEELISTTV RTVRESVLSN LRTFNWSRYF ERRPQEMDLA VYILGEKWCL KDCNNLV
001: MDRISGLPDE VLVKILSFVP TKVAVSTSIL SKRWEFLWMW LTKLKFGSKR YSESEFKRLQ CFLDRNLPLH RAPVIESFRL VLSDSHFKPE DIRMWVVVAV
101: SRYIRELKIY SSHYGEKQNI LPSSLYTCKS LVILKLDGGV LLDVPRMVCL PSLKTLELKG VRYFKQGSLQ RLLCNCPVLE DLVVNLSHHD NMGKLTVIVP
201: SLQRLSLSTP SSREFVIDTP SLLSFQLVDR NDNSHTFLIE NMPKLREAYI NVPFADIKSL IGSITSVKRL AISSEVGYGE GFIFNHLEEL TLWNKYSSNL
301: LVWFLKNSPN LRELMLVSET DDHENLGMLS WNQPSIVPEC MLSSLQKFTW FKYLGRPQDR DIAVYILKNA CRLRTATIKS DTRLFTKLEM ITELRLSSQA
401: SSTCELNFS
101: SRYIRELKIY SSHYGEKQNI LPSSLYTCKS LVILKLDGGV LLDVPRMVCL PSLKTLELKG VRYFKQGSLQ RLLCNCPVLE DLVVNLSHHD NMGKLTVIVP
201: SLQRLSLSTP SSREFVIDTP SLLSFQLVDR NDNSHTFLIE NMPKLREAYI NVPFADIKSL IGSITSVKRL AISSEVGYGE GFIFNHLEEL TLWNKYSSNL
301: LVWFLKNSPN LRELMLVSET DDHENLGMLS WNQPSIVPEC MLSSLQKFTW FKYLGRPQDR DIAVYILKNA CRLRTATIKS DTRLFTKLEM ITELRLSSQA
401: SSTCELNFS
Arabidopsis Description
FBD-associated F-box protein At4g10400 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV82]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.