Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007115.1-P | Field mustard | extracellular | 100.0 | 100.0 |
| CDX73428 | Canola | cytosol, extracellular, plasma membrane | 93.88 | 86.25 |
| CDY41219 | Canola | cytosol | 42.18 | 73.37 |
| CDY40228 | Canola | cytosol, extracellular, nucleus | 27.89 | 66.13 |
| CDY40230 | Canola | cytosol | 41.84 | 66.13 |
| CDY41221 | Canola | cytosol | 72.45 | 65.14 |
| CDX78281 | Canola | cytosol | 68.03 | 62.5 |
| CDY40226 | Canola | cytosol | 19.39 | 54.81 |
| CDX84780 | Canola | cytosol | 32.99 | 53.3 |
| CDY41224 | Canola | cytosol, plasma membrane | 74.83 | 53.27 |
| CDX73429 | Canola | mitochondrion | 22.11 | 52.85 |
| CDX84569 | Canola | mitochondrion | 47.28 | 52.65 |
| CDX78279 | Canola | cytosol | 66.67 | 50.91 |
| CDY40225 | Canola | endoplasmic reticulum, extracellular | 66.67 | 50.13 |
| CDX78283 | Canola | extracellular, plasma membrane | 70.41 | 49.88 |
| CDX96200 | Canola | extracellular, plasma membrane | 70.41 | 49.88 |
| AT3G54910.2 | Thale cress | cytosol | 61.9 | 48.79 |
| CDX73430 | Canola | extracellular, vacuole | 68.71 | 48.67 |
| CDY40231 | Canola | cytosol | 67.69 | 47.38 |
| CDX73431 | Canola | endoplasmic reticulum, plasma membrane | 67.01 | 47.36 |
| CDY48142 | Canola | cytosol | 27.89 | 41.62 |
| CDY32785 | Canola | cytosol | 50.68 | 40.38 |
| CDY35566 | Canola | cytosol | 18.71 | 40.15 |
| CDY67485 | Canola | cytosol | 49.32 | 40.06 |
| CDY17463 | Canola | cytosol | 40.48 | 39.93 |
| CDY52958 | Canola | cytosol | 27.55 | 39.9 |
| CDX73432 | Canola | extracellular, plasma membrane | 56.12 | 38.73 |
| CDX79668 | Canola | cytosol | 45.58 | 37.96 |
| CDY16725 | Canola | cytosol, extracellular, nucleus | 32.99 | 37.89 |
| CDX78280 | Canola | extracellular, golgi, mitochondrion, plastid | 59.52 | 37.88 |
| CDY34607 | Canola | cytosol | 18.03 | 37.32 |
| CDY41220 | Canola | cytosol | 19.39 | 35.85 |
| CDY23937 | Canola | mitochondrion | 44.22 | 33.59 |
| CDY35372 | Canola | cytosol | 10.88 | 32.65 |
| CDX87839 | Canola | cytosol, endoplasmic reticulum, plastid | 42.52 | 29.48 |
| CDX74515 | Canola | cytosol | 45.92 | 28.78 |
| CDY22729 | Canola | nucleus | 22.11 | 28.51 |
| CDY01651 | Canola | mitochondrion | 30.95 | 26.92 |
| CDY64738 | Canola | extracellular, nucleus, peroxisome | 28.23 | 26.69 |
| CDY53464 | Canola | cytosol | 24.49 | 17.65 |
| CDY47798 | Canola | plasma membrane | 24.83 | 17.18 |
| CDY55715 | Canola | cytosol, nucleus, plasma membrane | 23.81 | 17.07 |
| CDY09047 | Canola | cytosol | 25.85 | 16.85 |
| CDY38511 | Canola | cytosol | 22.45 | 16.1 |
| CDY66257 | Canola | mitochondrion | 22.79 | 15.58 |
| CDY22940 | Canola | plasma membrane | 41.16 | 14.3 |
| CDX91627 | Canola | cytosol | 13.61 | 12.31 |
| CDY27080 | Canola | cytosol | 13.27 | 11.47 |
Protein Annotations
| EnsemblPlants:CDY72604 | EnsemblPlantsGene:GSBRNA2T00033915001 | Gene3D:3.80.10.10 | InterPro:FBD | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_2 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | PFAM:PF07723 | PFAM:PF08387 | ProteinID:CDY72604 |
| ProteinID:CDY72604.1 | SMART:SM00579 | SUPFAM:SSF52058 | UniParc:UPI00025429A4 | UniProt:A0A078K0Z7 | MapMan:35.1 |
Description
BnaCnng78510DBnaCnng78510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K0Z7]
Coordinates
chrLK052182:-:426..1463
Molecular Weight (calculated)
33558.9 Da
IEP (calculated)
4.735
GRAVY (calculated)
0.096
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPSNLFTCK SLVILKLAGD IILDVPRMVS LPSLKTLRLQ KVMFFNGETL QRLLSNCPIL EDLMVDLHDY DDTGKLSIVV PSLQSLSLFI PYRHEIDGFM
101: IETPSLKYFK LRDDSWHDHY SLIGNMPFLV EAYVDVDLPV INSVIRSITS VKRLAICSQD MLDEGFVFNQ LEHLEVCLCT LLFSNQLVRL LNASSKLKRL
201: DISLTDGHVP RDMDDWNQPS TVPECLLSSL QSLNWLEYTG EPQERDIVVY ILKHALHLKT ATITLTESDF TELDMIKELA RSSRASTTCE LMFD
101: IETPSLKYFK LRDDSWHDHY SLIGNMPFLV EAYVDVDLPV INSVIRSITS VKRLAICSQD MLDEGFVFNQ LEHLEVCLCT LLFSNQLVRL LNASSKLKRL
201: DISLTDGHVP RDMDDWNQPS TVPECLLSSL QSLNWLEYTG EPQERDIVVY ILKHALHLKT ATITLTESDF TELDMIKELA RSSRASTTCE LMFD
001: MWLPKLKYGH RDSSECKRLE CFLDKNLPLH RAPVIESFRL YLIDSKCTPE NIKMWVVIAV SHCLRELEVI YSSYPEKPNI LPSNLYTCKS LVILELCGEI
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD
Arabidopsis Description
At3g54910 [Source:UniProtKB/TrEMBL;Acc:Q501B7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.