Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78281 | Canola | cytosol | 58.44 | 70.31 |
| CDY41219 | Canola | cytosol | 29.61 | 67.46 |
| CDY72604 | Canola | extracellular | 50.91 | 66.67 |
| CDY41221 | Canola | cytosol | 55.84 | 65.75 |
| CDY41220 | Canola | cytosol | 27.01 | 65.41 |
| CDX73428 | Canola | cytosol, extracellular, plasma membrane | 52.73 | 63.44 |
| CDX73430 | Canola | extracellular, vacuole | 65.71 | 60.96 |
| AT3G54910.2 | Thale cress | cytosol | 58.96 | 60.86 |
| CDY40230 | Canola | cytosol | 29.35 | 60.75 |
| CDX78283 | Canola | extracellular, plasma membrane | 65.45 | 60.72 |
| CDX96200 | Canola | extracellular, plasma membrane | 65.45 | 60.72 |
| CDY41224 | Canola | cytosol, plasma membrane | 64.94 | 60.53 |
| CDY40228 | Canola | cytosol, extracellular, nucleus | 19.48 | 60.48 |
| CDX73429 | Canola | mitochondrion | 19.22 | 60.16 |
| CDY40231 | Canola | cytosol | 63.9 | 58.57 |
| CDX73431 | Canola | endoplasmic reticulum, plasma membrane | 62.34 | 57.69 |
| CDY40225 | Canola | endoplasmic reticulum, extracellular | 55.58 | 54.73 |
| CDX84569 | Canola | mitochondrion | 36.88 | 53.79 |
| CDX78280 | Canola | extracellular, golgi, mitochondrion, plastid | 61.04 | 50.87 |
| CDY67485 | Canola | cytosol | 45.71 | 48.62 |
| CDY32785 | Canola | cytosol | 46.49 | 48.51 |
| CDX84780 | Canola | cytosol | 22.86 | 48.35 |
| CDX73432 | Canola | extracellular, plasma membrane | 52.73 | 47.65 |
| CDY40226 | Canola | cytosol | 12.73 | 47.12 |
| CDY17463 | Canola | cytosol | 36.36 | 46.98 |
| CDX79668 | Canola | cytosol | 41.82 | 45.61 |
| CDY23937 | Canola | mitochondrion | 41.04 | 40.83 |
| CDY16725 | Canola | cytosol, extracellular, nucleus | 25.45 | 38.28 |
| CDY48142 | Canola | cytosol | 19.48 | 38.07 |
| CDY35566 | Canola | cytosol | 13.25 | 37.23 |
| CDY35372 | Canola | cytosol | 9.35 | 36.73 |
| CDY52958 | Canola | cytosol | 18.7 | 35.47 |
| CDY64738 | Canola | extracellular, nucleus, peroxisome | 28.57 | 35.37 |
| CDY34607 | Canola | cytosol | 12.47 | 33.8 |
| CDX74515 | Canola | cytosol | 40.52 | 33.26 |
| CDY01651 | Canola | mitochondrion | 27.27 | 31.07 |
| CDX87839 | Canola | cytosol, endoplasmic reticulum, plastid | 33.51 | 30.42 |
| CDY22729 | Canola | nucleus | 15.58 | 26.32 |
| CDY53464 | Canola | cytosol | 17.4 | 16.42 |
| CDY55715 | Canola | cytosol, nucleus, plasma membrane | 17.14 | 16.1 |
| CDY38511 | Canola | cytosol | 16.36 | 15.37 |
| CDY47798 | Canola | plasma membrane | 16.88 | 15.29 |
| CDY09047 | Canola | cytosol | 17.66 | 15.08 |
| CDY66257 | Canola | mitochondrion | 16.1 | 14.42 |
| CDY22940 | Canola | plasma membrane | 30.13 | 13.71 |
| CDX91627 | Canola | cytosol | 10.39 | 12.31 |
| CDY27080 | Canola | cytosol | 10.13 | 11.47 |
Protein Annotations
| EnsemblPlants:CDX78279 | EnsemblPlantsGene:GSBRNA2T00129622001 | Gene3D:3.80.10.10 | InterPro:FBD | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_2 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | PFAM:PF07723 | PFAM:PF08387 | ProteinID:CDX78279 |
| ProteinID:CDX78279.1 | SEG:seg | SMART:SM00579 | SUPFAM:SSF52047 | UniParc:UPI0004EDD81A | MapMan:35.1 |
Description
BnaA09g34740D
Coordinates
chrLK031814:-:2158179..2161755
Molecular Weight (calculated)
44287.0 Da
IEP (calculated)
6.010
GRAVY (calculated)
-0.002
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKSSTLKTF YPNYLFYIDC SEPESKRLQC FLDRNLPLHR APVIESFRLQ LISSRFKPEN INLWVAIAAS HCLRELEILY ESDPDKPIIL LSSLFTCKSL
101: TVLKLDGDII LDVPRMVSLP SLKTLRLHKV IYSKDETLQR LLSSCPILED VVVGLRENDT MGKLIVAVPS LQSLSFYIPW SNDIDGFVIN TPALKYFKLM
201: DRNYRSYNCL IEHMPNLIEA HLDVELDDMK SIIGSITSVK RLTICCSQTM LDQGFVFNQL EHLDLCLCAP LFPDQLFRLL KASSKLKRLH LFFMNSDHYP
301: QEDMDDWNQP STVPECILSS LQSLSWSKYT GEPQEREVVV YILKHALHLE TATIKSFESE VPKFEMLKEL ALSSRASATC QLMFE
101: TVLKLDGDII LDVPRMVSLP SLKTLRLHKV IYSKDETLQR LLSSCPILED VVVGLRENDT MGKLIVAVPS LQSLSFYIPW SNDIDGFVIN TPALKYFKLM
201: DRNYRSYNCL IEHMPNLIEA HLDVELDDMK SIIGSITSVK RLTICCSQTM LDQGFVFNQL EHLDLCLCAP LFPDQLFRLL KASSKLKRLH LFFMNSDHYP
301: QEDMDDWNQP STVPECILSS LQSLSWSKYT GEPQEREVVV YILKHALHLE TATIKSFESE VPKFEMLKEL ALSSRASATC QLMFE
001: MWLPKLKYGH RDSSECKRLE CFLDKNLPLH RAPVIESFRL YLIDSKCTPE NIKMWVVIAV SHCLRELEVI YSSYPEKPNI LPSNLYTCKS LVILELCGEI
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD
Arabidopsis Description
At3g54910 [Source:UniProtKB/TrEMBL;Acc:Q501B7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.