CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid, extracellular

Predictor Summary:

plastid 2
extracellular 1
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007112.1-P	Field mustard	extracellular, golgi	82.9	99.22
CDY40225	Canola	endoplasmic reticulum, extracellular	56.93	67.26
CDY41219	Canola	cytosol	24.24	66.27
CDX78283	Canola	extracellular, plasma membrane	58.66	65.3
CDX96200	Canola	extracellular, plasma membrane	58.66	65.3
CDX73431	Canola	endoplasmic reticulum, plasma membrane	57.79	64.18
CDY41224	Canola	cytosol, plasma membrane	56.93	63.68
CDX73430	Canola	extracellular, vacuole	56.71	63.13
CDY41220	Canola	cytosol	21.64	62.89
CDX78281	Canola	cytosol	43.51	62.81
CDY40231	Canola	cytosol	56.06	61.67
CDX78279	Canola	cytosol	50.87	61.04
CDY72604	Canola	extracellular	37.88	59.52
CDX73428	Canola	cytosol, extracellular, plasma membrane	41.13	59.38
CDY41221	Canola	cytosol	41.56	58.72
CDX73429	Canola	mitochondrion	15.58	58.54
AT3G54910.2	Thale cress	cytosol	46.75	57.91
CDY40230	Canola	cytosol	22.94	56.99
CDY67485	Canola	cytosol	44.59	56.91
CDY17463	Canola	cytosol	36.36	56.38
CDY32785	Canola	cytosol	43.94	55.01
CDX84780	Canola	cytosol	21.0	53.3
CDX79668	Canola	cytosol	40.04	52.41
CDX84569	Canola	mitochondrion	29.87	52.27
CDY40226	Canola	cytosol	10.82	48.08
CDY40228	Canola	cytosol, extracellular, nucleus	12.55	46.77
CDY23937	Canola	mitochondrion	37.01	44.19
CDY35566	Canola	cytosol	12.55	42.34
CDY01651	Canola	mitochondrion	29.0	39.65
CDY35372	Canola	cytosol	8.23	38.78
CDY34607	Canola	cytosol	11.69	38.03
CDX73432	Canola	extracellular, plasma membrane	34.85	37.79
CDX74515	Canola	cytosol	38.1	37.53
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	33.12	36.08
CDY48142	Canola	cytosol	15.37	36.04
CDY16725	Canola	cytosol, extracellular, nucleus	19.91	35.94
CDY64738	Canola	extracellular, nucleus, peroxisome	22.29	33.12
CDY52958	Canola	cytosol	14.29	32.51
CDY22729	Canola	nucleus	11.9	24.12
CDY55715	Canola	cytosol, nucleus, plasma membrane	14.72	16.59
CDY53464	Canola	cytosol	13.64	15.44
CDY47798	Canola	plasma membrane	13.85	15.06
CDY38511	Canola	cytosol	13.2	14.88
CDX91627	Canola	cytosol	9.96	14.15
CDY09047	Canola	cytosol	13.64	13.97
CDY66257	Canola	mitochondrion	12.99	13.95
CDY27080	Canola	cytosol	9.74	13.24
CDY22940	Canola	plasma membrane	23.16	12.65

Protein Annotations

EnsemblPlants:CDX78280	EnsemblPlantsGene:GSBRNA2T00129623001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212
PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387	ProteinID:CDX78280	ProteinID:CDX78280.1	SEG:seg
SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EED56F	MapMan:35.1	:

Description

BnaA09g34750D

Coordinates

chrLK031814:-:2161806..2165549

Molecular Weight (calculated)

53239.3 Da

IEP (calculated)

8.162

GRAVY (calculated)

-0.016

Length

462 amino acids

Sequence
(BLAST)

001: MLSTVKKRIM LLFGAKFYVS SGSIIFLDTR RKPFGKVKIR KQFHLFSLSL HPPSSLGYQL LKLQRWYIIG FVSFSDMDRI SGLSDELLVK ILLLVPTKVA
101: VSTSILSKRW ECLWMWLPKL KYDFRGCPEP EGKRLLLFLD RNLPLHRAPV IESFRLELYG SYLTPENVKM WVVIALSHCL RELDILYESY PPSKPIVLPS
201: NLFTCKSLSV LKLDGDIILD VPRMVSLPSL KTLQLQSVTY SKDETLQRLL YNCPVLEDLM LHLRDYGDTM QKYFKLVDDN DKSHYCLIEH MPNLIEAHLD
301: VSLTHIKSLI GSITSVKRLT ICSRFDEGFV FNRLEHLKVC ICNDHSSNQL FRLLKSSSIL QELNLFSMED HEPQGMDDWN EPSTVPECLL SSLQTLSWST
401: YTGEPQERDI VVYILKHALH LKTARIKSYE SAVPKFDMLK ELSLSSRASA SCKLIFECAS ED

Best Arabidopsis Sequence Match ( AT3G54910.1 )
(BLAST)

001: MWLPKLKYGH RDSSECKRLE CFLDKNLPLH RAPVIESFRL YLIDSKCTPE NIKMWVVIAV SHCLRELEVI YSSYPEKPNI LPSNLYTCKS LVILELCGEI
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD

Arabidopsis Description

At3g54910 [Source:UniProtKB/TrEMBL;Acc:Q501B7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.