CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028194.1-P	Field mustard	cytosol	47.63	54.76
CDX84780	Canola	cytosol	27.51	51.1
CDX74515	Canola	cytosol	68.34	49.25
CDY23937	Canola	mitochondrion	51.18	44.7
CDY41219	Canola	cytosol	20.71	41.42
CDY17463	Canola	cytosol	36.09	40.94
CDX73429	Canola	mitochondrion	14.2	39.02
AT5G38570.1	Thale cress	cytosol, nucleus, plasma membrane	43.2	38.52
AT5G38565.1	Thale cress	cytosol, peroxisome, plastid	37.87	36.68
CDY40225	Canola	endoplasmic reticulum, extracellular	41.12	35.55
CDY40230	Canola	cytosol	18.93	34.41
CDY32785	Canola	cytosol	36.98	33.88
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	42.31	33.73
CDX79668	Canola	cytosol	35.21	33.71
CDY67485	Canola	cytosol	36.09	33.7
CDY41224	Canola	cytosol, plasma membrane	41.12	33.66
CDX84569	Canola	mitochondrion	25.44	32.58
CDX96200	Canola	extracellular, plasma membrane	39.35	32.05
CDX78283	Canola	extracellular, plasma membrane	39.35	32.05
CDX73430	Canola	extracellular, vacuole	39.05	31.81
CDX73431	Canola	endoplasmic reticulum, plasma membrane	38.76	31.49
CDY40231	Canola	cytosol	38.76	31.19
CDY72604	Canola	extracellular	26.92	30.95
CDY34607	Canola	cytosol	12.72	30.28
CDY35566	Canola	cytosol	12.13	29.93
CDX78280	Canola	extracellular, golgi, mitochondrion, plastid	39.65	29.0
CDX73428	Canola	cytosol, extracellular, plasma membrane	26.33	27.81
CDX78281	Canola	cytosol	26.04	27.5
CDY48142	Canola	cytosol	15.98	27.41
CDX78279	Canola	cytosol	31.07	27.27
CDY41221	Canola	cytosol	26.33	27.22
CDY35372	Canola	cytosol	7.69	26.53
CDY64738	Canola	extracellular, nucleus, peroxisome	23.37	25.4
CDY52958	Canola	cytosol	14.5	24.14
CDY41220	Canola	cytosol	10.36	22.01
CDX73432	Canola	extracellular, plasma membrane	25.74	20.42
CDY16725	Canola	cytosol, extracellular, nucleus	15.38	20.31
CDY40226	Canola	cytosol	6.21	20.19
CDY22729	Canola	nucleus	12.72	18.86
CDY40228	Canola	cytosol, extracellular, nucleus	5.92	16.13
CDY47798	Canola	plasma membrane	16.27	12.94
CDX91627	Canola	cytosol	12.13	12.62
CDY09047	Canola	cytosol	16.27	12.2
CDY38511	Canola	cytosol	14.79	12.2
CDY27080	Canola	cytosol	11.83	11.76
CDY53464	Canola	cytosol	14.2	11.76
CDY55715	Canola	cytosol, nucleus, plasma membrane	13.91	11.46
CDY66257	Canola	mitochondrion	13.02	10.23
CDY22940	Canola	plasma membrane	21.01	8.39

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	GO:A0A078EKI4	EnsemblPlants:CDY01651	ProteinID:CDY01651	ProteinID:CDY01651.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00112712001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646	PFAM:PF08387
PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	TMHMM:TMhelix
UniParc:UPI0004EEA4CC	SEG:seg	:	:	:	:

Description

BnaC04g31010D

Coordinates

chrLK031928:+:74539..76262

Molecular Weight (calculated)

39301.4 Da

IEP (calculated)

8.522

GRAVY (calculated)

0.154

Length

338 amino acids

Sequence
(BLAST)

001: MGFFGYYVRI RKRKAKRSKL CRRSVPVCKD ITRSINDLSD ELLIKILSFL PTKVAVSTSI LSKQWQFLWM WLPKLEYSSL RYYSESSAPR EFIDKYLPLH
101: RAPFLAMYMT WIFIIVQWIK IYFRAAFIHD ESLQGLLDIC PVLEDLSVLL RGECSMGEIT VIHMWMLCSL FSRVSLDPSH LSSILQYVQR SQKEVGRMKC
201: MVVALFSNFN QLEHLKLCVC KDHSSDLLGQ LLKDSPNLRV LDVFHTGVCW KQPSQVPQCL LSSLQIFNWS GYFGRAQERD IAVYILKNAC CLEKVTIFAD
301: IVQYSVPHLN MIKELAFSSR ASTTCELVFV ECPYEMFD

Best Arabidopsis Sequence Match ( AT5G38590.3 )
(BLAST)

001: MDKINGLPDD LLVKILSYVP TDIAVSTSIL SKRWEFLWMW LPNLDYTSRW CRKPGDVGLR DFIHKNLPLH RAPVIESLRF HSNSPDIKPE DIRRWIEIAV
101: SRHVHDLDID HFSENENIFL SSFFACKSLV TLKLRSVTLR DIPSMDGYGD GFVFNQLEHL TLCVCRGDSP SLLGQLLKDS PNLRILEISV MEDHVDDVGI
201: SLDGWNQPSS VPECLLSSLQ IFKWPQYLGR PEDRDIAVYI LKNARHLKKT TILADRCERF VTQRRMIKEL LQALPARIC

Arabidopsis Description

FBD-associated F-box protein At5g38590 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.