Factsheet for Bra028194.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007115.1-P	Field mustard	extracellular	49.32	49.32
CDX74515	Canola	cytosol	77.89	48.83
CDY01651	Canola	mitochondrion	54.76	47.63
Bra007169.1-P	Field mustard	extracellular	48.64	47.35
Bra007168.1-P	Field mustard	cytosol, extracellular, nucleus	45.58	45.73
Bra007113.1-P	Field mustard	cytosol, extracellular, plasma membrane	45.58	41.88
AT5G38570.1	Thale cress	cytosol, nucleus, plasma membrane	51.02	39.58
Bra023058.1-P	Field mustard	cytosol	46.94	37.0
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	52.38	36.93
AT5G38565.1	Thale cress	cytosol, peroxisome, plastid	42.18	35.53
Bra032036.1-P	Field mustard	cytosol	21.43	34.81
Bra035845.1-P	Field mustard	cytosol, extracellular, nucleus	29.59	33.98
Bra029225.1-P	Field mustard	cytosol	32.31	32.99
Bra007112.1-P	Field mustard	extracellular, golgi	42.52	32.38
Bra007114.1-P	Field mustard	extracellular, plasma membrane	45.24	32.05
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	25.85	19.79
Bra022582.1-P	Field mustard	cytosol	26.19	19.35
Bra002819.1-P	Field mustard	extracellular, plasma membrane	49.32	19.05
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	25.51	18.12
Bra040954.1-P	Field mustard	cytosol, nucleus, plastid	10.2	17.75
Bra039568.1-P	Field mustard	extracellular, golgi	23.81	16.95
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	22.11	13.32

Protein Annotations

EnsemblPlants:Bra028194.1	EnsemblPlants:Bra028194.1-P	EnsemblPlantsGene:Bra028194	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387
SMART:SM00579	SUPFAM:SSF52047	UniParc:UPI00025445BE	UniProt:M4EHC9	MapMan:35.1	:

Description

AT5G38570 (E=3e-071) | F-box family protein

Coordinates

chrA04:-:6555901..6556917

Molecular Weight (calculated)

33309.3 Da

IEP (calculated)

4.913

GRAVY (calculated)

0.113

Length

294 amino acids

Sequence
(BLAST)

001: MDVPSTACLP SLKTLGLHSL MFEDDESLQG LLDICPVLED LSVQLRGKCS MGEISVIVPT LQRLSHSVSW CCYIDGYVID TPSLKYFKLE DWYNSTHGVQ
101: IKDMPELREA YVDVVFFVLK SVIGSITSVK HLTICSEIPE RGWEDEVYGG GGFIFNQLEH LKLCVCKDHS SDLLGQLLKD SPNLRVLDVF HTGIHGFVED
201: TDMVCWKQPS QVPQCLLSSL QIFNWSGYFG RPEERDIAVY ILKNACFLKK VTIFADIVQY SVPHLKMIKE LAFSSRASTT CELVFVECPY EMFH

Best Arabidopsis Sequence Match ( AT5G38570.1 )
(BLAST)

001: MDNINGLPDD LLVKILSFVP TYVAVSTCVL SKRWEFLWMW LPNLEFVSPW DSRPGIVDFI NKKLPIHRAP VIERLCIHIN SNPHIKPEYI KRWIEIAVSH
101: YVRELQIDYH SKTKITLQLE AESYFIDGKY LQQLISGCPV LEDLSLRFCC NDNLREFTVI IPSLQSLSLF LFGNSNLNRY KIDTPSLKYL KLEDWNDPEH
201: YSWTNMPKLR EAYVDVESSN HLKTLIGSIT SVKHLTICCL EDYLYGDGFI FNHLEHLKLC MCPFDSSNLL GQLLKGSPNL QVLDIFEMKR NDIVCWNQPS
301: SVLECLLSSL KILNWSAYFG RPQDRDIAVY ILKNACHLKT ATFLTDKRIN DVRRLKMIKE LRLSPRASST CQLVFGEDF

Arabidopsis Description

Putative FBD-associated F-box protein At5g38570 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFW4]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.