Factsheet for Bra030421.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87839	Canola	cytosol, endoplasmic reticulum, plastid	71.46	70.28
AT5G38580.1	Thale cress	cytosol	23.74	58.93
AT5G38590.2	Thale cress	cytosol	55.4	56.34
Bra028194.1-P	Field mustard	cytosol	36.93	52.38
Bra007112.1-P	Field mustard	extracellular, golgi	46.04	49.74
Bra007114.1-P	Field mustard	extracellular, plasma membrane	48.44	48.67
Bra007115.1-P	Field mustard	extracellular	33.81	47.96
Bra007169.1-P	Field mustard	extracellular	33.81	46.69
Bra007113.1-P	Field mustard	cytosol, extracellular, plasma membrane	35.73	46.56
Bra023058.1-P	Field mustard	cytosol	41.25	46.11
Bra007168.1-P	Field mustard	cytosol, extracellular, nucleus	31.18	44.37
Bra035845.1-P	Field mustard	cytosol, extracellular, nucleus	24.46	39.84
Bra029225.1-P	Field mustard	cytosol	26.38	38.19
Bra032036.1-P	Field mustard	cytosol	15.11	34.81
Bra002819.1-P	Field mustard	extracellular, plasma membrane	45.8	25.1
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	16.55	17.97
Bra022582.1-P	Field mustard	cytosol	16.07	16.83
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	16.55	16.67
Bra040954.1-P	Field mustard	cytosol, nucleus, plastid	6.71	16.57
Bra039568.1-P	Field mustard	extracellular, golgi	15.83	15.98
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	13.43	11.48

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra030421	EnsemblPlants:Bra030421.1	EnsemblPlants:Bra030421.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	UniProt:M4ENQ1	PFAM:PF00646	PFAM:PF07723	PFAM:PF08387
PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI00025479DC	:	:	:	:	:

Description

AT5G38590 (E=1e-122) | F-box family protein

Coordinates

chrA05:-:11106256..11107684

Molecular Weight (calculated)

47686.8 Da

IEP (calculated)

4.875

GRAVY (calculated)

0.022

Length

417 amino acids

Sequence
(BLAST)

001: MDNISGLPDE LLVRILSLVP TKVVVSTSIL SKRWKFLWMS LPKLEFVDRD ESLLVLKDFI NKNLPLHRAP VIQSFLLSLY ESREKNIKPE DIRQWVEIAV
101: SRHLRELDVS YSSDKKENMV PNSLFACKSL VVLKLRFLTL MDVPSTACLP SLKTLLLELV VYEDQKPFEA LLSICPVLED LEVWFREDES IQEFTINVPS
201: LRKLCLHVSY YLSSLERYEI DTPCLEYLEL ADWSDSPCLV KNMPKLEKAH VDVVSFAVKN VIGSVASVKH LTVCSEDVYG DGIVFDQLEH LKLCICKDDS
301: SNVLAQFLKD SPNLRVLVIS QLDVNLKTNE MGFWNQPSSV PECLLSSLQI LNWEGYFGRP QDRDIAVYIL RNARHLRTAT FWADTNEHDV PNLEMIKGLT
401: LSSRASSTCE LVFVEDS

Best Arabidopsis Sequence Match ( AT5G38590.2 )
(BLAST)

001: MDKINGLPDD LLVKILSYVP TDIAVSTSIL SKRWEFLWMW LPNLDYTSRW CRKPGDVGLR DFIHKNLPLH RAPVIESLRF HSNSPDIKPE DIRRWIEIAV
101: SRHVHDLDID HFSENENIFL SSFFACKSLV TLKLRSVTLR DIPSMVCLPS LKTLLLDNVS FVEGKSLQEL LSICPVLEDL SVYCDDYENT KELTIVVPSL
201: LSLSLYIPDE WLLDGYWIDT PSLEYLKLED WNSCDHLSLI KNMPKLREAY VDAKCFLPKS VIESITSVKH LTICSKDGYG DGFVFNQLEH LTLCVCRGDS
301: PSLLGQLLKD SPNLRILEIS VMEDHVDDVG ISLDGWNQPS SVPECLLSSL QIFKWPQYLG RPEDRDIAVY ILKNARHLKK TTILADRCER FVTQRRMIKE
401: LLQALPARIC

Arabidopsis Description

FBD-associated F-box protein At5g38590 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.