Factsheet for Bra032036.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35372	Canola	cytosol	51.93	95.92
CDY55715	Canola	cytosol, nucleus, plasma membrane	85.64	37.8
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	61.88	27.05
AT2G26860.2	Thale cress	cytosol	53.04	23.7
Bra028194.1-P	Field mustard	cytosol	34.81	21.43
Bra022582.1-P	Field mustard	cytosol	44.2	20.1
Bra007115.1-P	Field mustard	extracellular	32.04	19.73
Bra007113.1-P	Field mustard	cytosol, extracellular, plasma membrane	33.15	18.75
Bra007169.1-P	Field mustard	extracellular	30.94	18.54
Bra007168.1-P	Field mustard	cytosol, extracellular, nucleus	27.07	16.72
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	35.36	16.67
Bra007112.1-P	Field mustard	extracellular, golgi	34.25	16.06
Bra040954.1-P	Field mustard	cytosol, nucleus, plastid	14.92	15.98
Bra023058.1-P	Field mustard	cytosol	32.6	15.82
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	34.81	15.11
Bra029225.1-P	Field mustard	cytosol	23.2	14.58
Bra007114.1-P	Field mustard	extracellular, plasma membrane	33.15	14.46
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	37.57	13.93
Bra035845.1-P	Field mustard	cytosol, extracellular, nucleus	19.34	13.67
Bra039568.1-P	Field mustard	extracellular, golgi	29.83	13.08
Bra002819.1-P	Field mustard	extracellular, plasma membrane	37.57	8.94

Protein Annotations

EnsemblPlants:Bra032036.1	EnsemblPlants:Bra032036.1-P	EnsemblPlantsGene:Bra032036	InterPro:FBD	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173
PFAM:PF08387	SMART:SM00579	UniParc:UPI0002544EED	UniProt:M4ETA6	MapMan:35.1	:

Description

AT2G26860 (E=8e-044) | F-box family protein

Coordinates

chrA04:+:11345119..11345826

Molecular Weight (calculated)

21800.3 Da

IEP (calculated)

7.162

GRAVY (calculated)

-0.054

Length

181 amino acids

Sequence
(BLAST)

001: MLNYSYLVRH MPEVEEADIN VQYYLFNIFD SFTSVKRLSL CVSFNIISDE YMYHDGIFFN RLEHLKLCIR FDYWSKLLFR LLHDSPNLRV LNLCVSKYIR
101: FKKYEPINWN SSEISVPSCL LESLETFEFA EYRGSREERD FVSFIIRHAC HLKSSTITPL ISFQKVLMSA KEESHIRFWI F

Best Arabidopsis Sequence Match ( AT2G26860.1 )
(BLAST)

001: MDRISGLPDE LLVEILHCLP TKEVVSTSIL SKRWEFLWLW VPKLTFVMNH YESDLPIQDF ITKNLRLLKP QVIESFHLQC FSSSFKPEDI KHWVVTTISR
101: RVRELIINYC DLSWLDKPVV LLDLPNSLYT CTSLVTLKLI GHSIIVDVPR TVSLPCLKTL ELDSVAYSNE ESLRLLLSYC PVLEDLTIHR DMHDNVKTLV
201: IIVPSLLRLN LPIDGAYSCD GYVIVTPALK YLKVPGLYRE DFSYLLTHMP NVEEADLSVE QDVERLFESI TSVKRLSLFV LLDIEDESMY HNGIYFNQLE
301: HLNLHIYRDN WSKLLVRLLE DSPKLRVLKI VVDGEPSFDE EFEHVSWIYN DESSVPKCLL DSLEVFEFAG YTRRPEERDF VSFILKHACH LKSSSISRLS
401: CYVLE

Arabidopsis Description

FBD-associated F-box protein At2g26860 [Source:UniProtKB/Swiss-Prot;Acc:Q84X02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.