Factsheet for Bra032049.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53464	Canola	cytosol	92.03	93.38
Bra032036.1-P	Field mustard	cytosol	27.05	61.88
AT2G26860.2	Thale cress	cytosol	56.28	57.53
Bra022582.1-P	Field mustard	cytosol	51.69	53.77
Bra039568.1-P	Field mustard	extracellular, golgi	39.86	39.95
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	35.27	38.02
Bra040954.1-P	Field mustard	cytosol, nucleus, plastid	14.73	36.09
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	38.41	32.58
Bra028194.1-P	Field mustard	cytosol	18.12	25.51
Bra007115.1-P	Field mustard	extracellular	17.39	24.49
Bra007169.1-P	Field mustard	extracellular	16.43	22.52
Bra007113.1-P	Field mustard	cytosol, extracellular, plasma membrane	17.39	22.5
Bra007168.1-P	Field mustard	cytosol, extracellular, nucleus	15.22	21.5
Bra023058.1-P	Field mustard	cytosol	17.87	19.84
Bra029225.1-P	Field mustard	cytosol	12.32	17.71
Bra035845.1-P	Field mustard	cytosol, extracellular, nucleus	10.63	17.19
Bra007112.1-P	Field mustard	extracellular, golgi	15.7	16.84
Bra007114.1-P	Field mustard	extracellular, plasma membrane	16.67	16.63
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	16.67	16.55
Bra002819.1-P	Field mustard	extracellular, plasma membrane	20.05	10.91

Protein Annotations

EnsemblPlants:Bra032049.1	EnsemblPlants:Bra032049.1-P	EnsemblPlantsGene:Bra032049	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387
SUPFAM:SSF52047	UniParc:UPI0002544D3B	UniProt:M4ETB9	MapMan:35.1	:	:

Description

AT2G26860 (E=4e-121) | F-box family protein

Coordinates

chrA04:-:11238744..11240168

Molecular Weight (calculated)

47930.8 Da

IEP (calculated)

5.208

GRAVY (calculated)

0.012

Length

414 amino acids

Sequence
(BLAST)

001: MFNISTLFYC FVKGDGQNQW ILTFVPTKVA VSTSLLSKRW EFLWTWVPKL EFVDNKYESY LAIKDFINKN LPLLKAPVIE SFLLKCYYSF FQPEEITQWV
101: ATTVSRRIVE LDIDCVYCWS GEPCLLLPSS LFTCESLVTL KLNGEMILLD VPRTVSLPSL KTLHLGCVTY SKEDTFRLLL SYCPVLEDLV IRRSGRDKAK
201: AIVVISPSLQ RLTLPLDGGT SSTDEFVIVT PSLKYFNVED YNARYSYFVA HMPKVEEADI TVDEYLEMVF ESITSVKRLS LCVLFDFEER YMYHDGIFFS
301: QLEHLKLGIS FDYWSKLLFR LLRDAPKLRV LKLYVYSGGR FKKYEPISWN NDPSAVPTCV LESLETFEFA DYRGMQEERD FVSFIIKNAR HLKSSTITPC
401: SRMETCSSTD SSDD

Best Arabidopsis Sequence Match ( AT2G26860.2 )
(BLAST)

001: MDRISGLPDE LLVEILHCLP TKEVVSTSIL SKRWEFLWLW VPKLTFVMNH YESDLPIQDF ITKNLRLLKP QVIESFHLQC FSSSFKPEDI KHWVVTTISR
101: RVRELIINYC DLSWLDKPVV LLDLPNSLYT CTSLVTLKLI GHSIIVDVPR TVSLPCLKTL ELDSVAYSNE ESLRLLLSYC PVLEDLTIHR DMHDNVKTLV
201: IIVPSLLRLN LPIDGAYSCD GYVIVTPALK YLKVPGLYRE DFSYLLTHMP NVEEADLSVE QDVERLFESI TSVKRLSLFV LLDIEDESMY HNGIYFNQLE
301: HLNLHIYRDN WSKLLVRLLE DSPKLRVLKI VVDGEPSFDE EFEHVSWIYN DESSVPKCLL DSLEVFEFAG YTRRPEERDF VSFILKHACH LKSSSISRLS
401: CYVLE

Arabidopsis Description

FBD-associated F-box protein At2g26860 [Source:UniProtKB/Swiss-Prot;Acc:Q84X02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.