Factsheet for Bra039567.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid, golgi, mitochondrion

Predictor Summary:

plastid 2
cytosol 1
nucleus 1
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039568.1-P	Field mustard	extracellular, golgi	80.21	74.58
AT4G15075.1	Thale cress	cytosol	22.4	51.19
Bra040954.1-P	Field mustard	cytosol, nucleus, plastid	19.79	44.97
CDY22940	Canola	plasma membrane	96.61	43.85
Bra022582.1-P	Field mustard	cytosol	41.15	39.7
Bra032036.1-P	Field mustard	cytosol	16.67	35.36
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	38.02	35.27
AT4G15060.1	Thale cress	cytosol	41.41	29.5
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	33.85	26.64
Bra028194.1-P	Field mustard	cytosol	19.79	25.85
Bra007115.1-P	Field mustard	extracellular	19.53	25.51
Bra007168.1-P	Field mustard	cytosol, extracellular, nucleus	19.01	24.91
Bra007113.1-P	Field mustard	cytosol, extracellular, plasma membrane	20.31	24.38
Bra007169.1-P	Field mustard	extracellular	18.75	23.84
Bra023058.1-P	Field mustard	cytosol	21.09	21.72
Bra029225.1-P	Field mustard	cytosol	15.1	20.14
Bra007114.1-P	Field mustard	extracellular, plasma membrane	19.79	18.31
Bra035845.1-P	Field mustard	cytosol, extracellular, nucleus	11.98	17.97
Bra007112.1-P	Field mustard	extracellular, golgi	17.19	17.1
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	17.97	16.55
Bra002819.1-P	Field mustard	extracellular, plasma membrane	22.92	11.56

Protein Annotations

EnsemblPlants:Bra039567.1	EnsemblPlants:Bra039567.1-P	EnsemblPlantsGene:Bra039567	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387
SEG:seg	SMART:SM00579	SUPFAM:SSF52047	UniParc:UPI0002544E2C	UniProt:M4FEP5	MapMan:35.1

Description

AT4G00315 (E=1e-087) | F-box family protein

Coordinates

chrA01:-:11939208..11940522

Molecular Weight (calculated)

44114.2 Da

IEP (calculated)

5.190

GRAVY (calculated)

-0.080

Length

384 amino acids

Sequence
(BLAST)

001: MPQHRAPVIE SLRLSFSYGY KGSVTREDIR MWVAIAVTRF LRELSLDLTF EVNPTKLPSS LYTCKSLVIL ELEEGILVDV PRTTCLPSLK TLLLQGVTYA
101: DQKSLHRLLS SCPVLEDLFV KHNGCESEHL ETFSVIVPSL QRLTLKICRG SFFKALVMNT PSLKYFKFTD YTCEHHDFSD TDIDFDFDYN GYSFYSDDMP
201: KLEEMEVDST YLDTENFVSL ITHVKRLSLC LPDQAENEKA LYREGIVFSQ LRRLKLCSCT INWSKLLVRL LKDSPNLQEL EIHLDGAHTN ICEDPPVCWE
301: NELACVPDCL LSSLQTFKWT RIYGSQKEVD LVKYVLRNAR CLKTATILFR SISYSALEED ELEMVIQDLS LSSRGSKDVK LVFV

Best Arabidopsis Sequence Match ( AT4G00315.1 )
(BLAST)

001: MDKTSQLPDE LLVKVLSFLP TKDAVRTSLL SMRWKSLWMW LPKLEYDFRH YSVSEGQGLA RFITLSLLGH KAPAIESLSL KLRYGAIGSI KPEDIYLWVS
101: LAVHDSNVRE LSLKLCTFAE RPTKLPKSLY KCKSIVILKL KDEILVDVPR KVCLPSLKTL FLGRVTYSDE DSLHRLLSNC PVLEDLVVER DRIDNLGKLS
201: VVVKSLQRLT LKMSCPCHLD GIMMNTPSLK YLKVTDERQE SDSDNESDSD SPRYFYDFED MPKLEEADFV LTFQNIKKFF KFVTSIKRLS LCLGVYTEES
301: LYHEGLVFNQ LEQLKICSCD SDWSILLSRL LESSPNLREL EAYVIEDHPD RRVDLPNQWG NQLNCVPKCL LSSLETFKWS EMYGLLQNQM DVAKYILRNA
401: RCLKSATIFF PTTYAKETRD EMIEELSLSF QGPETCQVFF H

Arabidopsis Description

Putative F-box/FBD/LRR-repeat protein At4g00315 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAE5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.