Factsheet for Bra023058.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84569	Canola	mitochondrion	68.1	96.21
CDX79668	Canola	cytosol	77.21	81.59
Bra007169.1-P	Field mustard	extracellular	43.43	53.64
Bra007115.1-P	Field mustard	extracellular	40.48	51.36
Bra007113.1-P	Field mustard	cytosol, extracellular, plasma membrane	43.43	50.62
Bra007168.1-P	Field mustard	cytosol, extracellular, nucleus	39.14	49.83
Bra007114.1-P	Field mustard	extracellular, plasma membrane	54.16	48.67
Bra028194.1-P	Field mustard	cytosol	37.0	46.94
Bra007112.1-P	Field mustard	extracellular, golgi	47.99	46.37
Bra029225.1-P	Field mustard	cytosol	34.58	44.79
Bra035845.1-P	Field mustard	cytosol, extracellular, nucleus	28.95	42.19
Bra030421.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	46.11	41.25
Bra032036.1-P	Field mustard	cytosol	15.82	32.6
Bra002819.1-P	Field mustard	extracellular, plasma membrane	50.4	24.7
Bra039567.1-P	Field mustard	cytosol, golgi, mitochondrion, plastid	21.72	21.09
Bra040954.1-P	Field mustard	cytosol, nucleus, plastid	9.38	20.71
Bra032049.1-P	Field mustard	cytosol, extracellular, plastid	19.84	17.87
Bra039568.1-P	Field mustard	extracellular, golgi	19.03	17.19
Bra022582.1-P	Field mustard	cytosol	18.23	17.09
Bra031796.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	16.89	12.91

Protein Annotations

EnsemblPlants:Bra023058.1	EnsemblPlants:Bra023058.1-P	EnsemblPlantsGene:Bra023058	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	PFAM:PF07723	PFAM:PF08387
SMART:SM00579	SUPFAM:SSF52047	UniParc:UPI000253FF0C	UniProt:M4E2Q7	MapMan:35.1	:

Description

AT3G54910 (E=6e-100) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G10400.2); Has 661 Blast hits to 647 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 657; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA03:+:8443330..8444451

Molecular Weight (calculated)

43173.8 Da

IEP (calculated)

8.280

GRAVY (calculated)

-0.072

Length

373 amino acids

Sequence
(BLAST)

001: MWLPKLDYSS RKYLESGRAK LRRFLNKNLP LHRAPIIESF RLDFIASQFK PVTIRSWLLT AVSRNLREVE VSHGCNNKVL NMLPSSLYTC KSLVSVKLNG
101: RRLLVDVPRM VSLPCLKTLL LQDVEYKNED SLQRLLSNCP VLEDLVVEGC KGDNMVKFIV IVPSLQRLTV NILEDLDEFV MDTPSLKYFK LDYYNYKNHH
201: CLIERMPKLE EAYVELSFNH VYIDRFIGSI TFVKRLTLCI DDVYGDGFVF DQLEHLQLCT CDEQHTSGAV IVRLLKDSPN LRVLDLFKME YHNPIGLYTW
301: NQPSTVPECI LSSLQTFKCS GYLGRPRERD LVIYILKNAN NLKTATIWFP TVDMKKELVL SSRASNACQL VFD

Best Arabidopsis Sequence Match ( AT3G54910.2 )
(BLAST)

001: MWLPKLKYGH RDSSECKRLE CFLDKNLPLH RAPVIESFRL YLIDSKCTPE NIKMWVVIAV SHCLRELEVI YSSYPEKPNI LPSNLYTCKS LVILELCGEI
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD

Arabidopsis Description

At3g54910 [Source:UniProtKB/TrEMBL;Acc:Q501B7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.