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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 3
  • golgi 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:nucleus
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT5G38580.1 Thale cress cytosol 27.18 61.31
CDX84780 Canola cytosol 28.76 59.89
AT5G38590.2 Thale cress cytosol 57.78 53.41
AT5G38565.1 Thale cress cytosol, peroxisome, plastid 48.81 53.01
CDY23937 Canola mitochondrion 54.09 52.97
Bra028194.1-P Field mustard cytosol 39.58 51.02
AT4G10400.1 Thale cress cytosol 50.92 47.19
AT4G10420.1 Thale cress extracellular, golgi, nucleus 39.05 45.96
CDX74515 Canola cytosol 55.15 44.56
AT3G54910.2 Thale cress cytosol 42.74 43.43
CDY01651 Canola mitochondrion 38.52 43.2
AT4G10410.1 Thale cress cytosol, plasma membrane, plastid 29.29 42.21
AT4G09920.1 Thale cress cytosol, plasma membrane, plastid 34.83 41.77
AT4G15075.1 Thale cress cytosol 14.78 33.33
AT5G56700.2 Thale cress cytosol 19.53 20.56
AT5G11370.1 Thale cress cytosol, extracellular 14.51 17.68
AT2G26860.2 Thale cress cytosol 18.73 17.53
AT5G60610.1 Thale cress cytosol 17.68 17.27
AT5G62970.1 Thale cress cytosol 20.32 17.15
AT4G00315.1 Thale cress cytosol 19.79 17.01
AT1G55660.1 Thale cress endoplasmic reticulum, extracellular, plasma membrane 21.37 16.46
AT1G19410.1 Thale cress cytosol 17.68 15.4
AT5G56690.1 Thale cress endoplasmic reticulum 15.83 14.93
AT5G56410.1 Thale cress cytosol 17.94 13.52
AT4G15060.1 Thale cress cytosol 12.14 8.53
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1EntrezGene:833846ProteinID:AED94336.1ArrayExpress:AT5G38570EnsemblPlantsGene:AT5G38570
RefSeq:AT5G38570TAIR:AT5G38570RefSeq:AT5G38570-TAIR-GEnsemblPlants:AT5G38570.1TAIR:AT5G38570.1Unigene:At.55222
ProteinID:BAB10147.1InterPro:F-box-like_dom_sfInterPro:FBDGO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0008150InterPro:IPR032675InterPro:LRR_dom_sfRefSeq:NP_198673.2PFAM:PF08387PANTHER:PTHR32212
PANTHER:PTHR32212:SF173UniProt:Q9FFW4SMART:SM00579SUPFAM:SSF52047SUPFAM:SSF81383UniParc:UPI0000162796
SEG:seg:::::
Description
Putative FBD-associated F-box protein At5g38570 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFW4]
Coordinates
chr5:-:15449279..15450601
Molecular Weight (calculated)
44057.5 Da
IEP (calculated)
7.235
GRAVY (calculated)
-0.083
Length
379 amino acids
Sequence
(BLAST)
001: MDNINGLPDD LLVKILSFVP TYVAVSTCVL SKRWEFLWMW LPNLEFVSPW DSRPGIVDFI NKKLPIHRAP VIERLCIHIN SNPHIKPEYI KRWIEIAVSH
101: YVRELQIDYH SKTKITLQLE AESYFIDGKY LQQLISGCPV LEDLSLRFCC NDNLREFTVI IPSLQSLSLF LFGNSNLNRY KIDTPSLKYL KLEDWNDPEH
201: YSWTNMPKLR EAYVDVESSN HLKTLIGSIT SVKHLTICCL EDYLYGDGFI FNHLEHLKLC MCPFDSSNLL GQLLKGSPNL QVLDIFEMKR NDIVCWNQPS
301: SVLECLLSSL KILNWSAYFG RPQDRDIAVY ILKNACHLKT ATFLTDKRIN DVRRLKMIKE LRLSPRASST CQLVFGEDF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.