Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G56410.1 | Thale cress | cytosol | 61.69 | 55.07 |
| AT5G60610.1 | Thale cress | cytosol | 39.87 | 46.13 |
| AT5G56700.2 | Thale cress | cytosol | 34.97 | 43.61 |
| AT5G56690.1 | Thale cress | endoplasmic reticulum | 38.75 | 43.28 |
| AT5G11370.1 | Thale cress | cytosol, extracellular | 29.62 | 42.77 |
| AT4G00315.1 | Thale cress | cytosol | 41.87 | 42.63 |
| AT2G26860.2 | Thale cress | cytosol | 37.42 | 41.48 |
| AT1G55660.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 41.43 | 37.8 |
| AT1G19410.1 | Thale cress | cytosol | 36.08 | 37.24 |
| AT4G15075.1 | Thale cress | cytosol | 13.81 | 36.9 |
| AT5G38580.1 | Thale cress | cytosol | 12.47 | 33.33 |
| AT4G15060.1 | Thale cress | cytosol | 34.52 | 28.76 |
| AT4G10420.1 | Thale cress | extracellular, golgi, nucleus | 17.37 | 24.22 |
| AT5G38570.1 | Thale cress | cytosol, nucleus, plasma membrane | 17.15 | 20.32 |
| AT3G54910.2 | Thale cress | cytosol | 16.04 | 19.3 |
| AT5G38590.2 | Thale cress | cytosol | 17.37 | 19.02 |
| AT4G10400.1 | Thale cress | cytosol | 16.7 | 18.34 |
| AT5G38565.1 | Thale cress | cytosol, peroxisome, plastid | 13.81 | 17.77 |
| AT4G10410.1 | Thale cress | cytosol, plasma membrane, plastid | 10.02 | 17.11 |
| AT4G09920.1 | Thale cress | cytosol, plasma membrane, plastid | 9.13 | 12.97 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:836417 | ProteinID:AED97681.1 | ArrayExpress:AT5G62970 | EnsemblPlantsGene:AT5G62970 |
| RefSeq:AT5G62970 | TAIR:AT5G62970 | RefSeq:AT5G62970-TAIR-G | EnsemblPlants:AT5G62970.1 | TAIR:AT5G62970.1 | Unigene:At.55686 |
| ProteinID:BAB08840.1 | InterPro:F-box-like_dom_sf | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | RefSeq:NP_201102.1 | PFAM:PF07723 |
| PFAM:PF08387 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | UniProt:Q9FM55 | SMART:SM00579 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | UniParc:UPI00000A968C | : | : | : | : |
Description
Putative F-box/FBD/LRR-repeat protein At5g62970 [Source:UniProtKB/Swiss-Prot;Acc:Q9FM55]
Coordinates
chr5:+:25272033..25273537
Molecular Weight (calculated)
51881.6 Da
IEP (calculated)
6.787
GRAVY (calculated)
-0.157
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKISGFSDD ELLVKILSFL PFKFAITTSV LSKQWKFLWM RVPKLEYDED SMYSFEYSFR YFLPKAKEVD SETYSIVSES GHRMRSFIEK NLPLHSSPVI
101: ESLRLKFFTE VFQPEDIKLW VEIAVSRCAQ ELSVDFFPKE KHNALLPRNL YTCKSLVTLK LRNNILVDVP HVFSLPSLKI LHLERVTYGD GESLQRLLSN
201: CSVLEDLVVE LDTGDNVRKL DVIIPSLLSL SFGMSRYCAY EGYRIDTPSL KYFKLTDLSK TFSGLIENMP KLEEANITAR HNFKKLLELV TSVKRLSLNI
301: ENNDAEALTA IYGDDIVFNE LEHLNFHIHN AYWSELLYWL LKASPKLQNL EFDEQCSRDG TMGTLAVFWN QPNSVPQCLL STLQTFEWSG YPGSVQGKDL
401: ATYILRKSRQ LKIATISIGY GLDPQQKLKM EMDVKFSFRA SPTCKRVFY
101: ESLRLKFFTE VFQPEDIKLW VEIAVSRCAQ ELSVDFFPKE KHNALLPRNL YTCKSLVTLK LRNNILVDVP HVFSLPSLKI LHLERVTYGD GESLQRLLSN
201: CSVLEDLVVE LDTGDNVRKL DVIIPSLLSL SFGMSRYCAY EGYRIDTPSL KYFKLTDLSK TFSGLIENMP KLEEANITAR HNFKKLLELV TSVKRLSLNI
301: ENNDAEALTA IYGDDIVFNE LEHLNFHIHN AYWSELLYWL LKASPKLQNL EFDEQCSRDG TMGTLAVFWN QPNSVPQCLL STLQTFEWSG YPGSVQGKDL
401: ATYILRKSRQ LKIATISIGY GLDPQQKLKM EMDVKFSFRA SPTCKRVFY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.