Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
- plastid 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G09920.1 | Thale cress | cytosol, plasma membrane, plastid | 61.98 | 51.58 |
| AT4G10400.1 | Thale cress | cytosol | 69.58 | 44.74 |
| AT4G10420.1 | Thale cress | extracellular, golgi, nucleus | 53.61 | 43.79 |
| AT3G54910.2 | Thale cress | cytosol | 50.57 | 35.66 |
| Bra029225.1-P | Field mustard | cytosol | 37.26 | 34.03 |
| AT5G38590.2 | Thale cress | cytosol | 51.71 | 33.17 |
| AT5G38570.1 | Thale cress | cytosol, nucleus, plasma membrane | 42.21 | 29.29 |
| AT5G38565.1 | Thale cress | cytosol, peroxisome, plastid | 35.74 | 26.93 |
| CDY64738 | Canola | extracellular, nucleus, peroxisome | 29.28 | 24.76 |
| AT5G38580.1 | Thale cress | cytosol | 13.31 | 20.83 |
| AT4G15075.1 | Thale cress | cytosol | 10.65 | 16.67 |
| AT5G56700.2 | Thale cress | cytosol | 17.87 | 13.06 |
| AT5G60610.1 | Thale cress | cytosol | 17.11 | 11.6 |
| AT2G26860.2 | Thale cress | cytosol | 17.11 | 11.11 |
| AT5G62970.1 | Thale cress | cytosol | 17.11 | 10.02 |
| AT5G11370.1 | Thale cress | cytosol, extracellular | 11.79 | 9.97 |
| AT5G56690.1 | Thale cress | endoplasmic reticulum | 14.83 | 9.7 |
| AT1G19410.1 | Thale cress | cytosol | 15.97 | 9.66 |
| AT5G56410.1 | Thale cress | cytosol | 18.25 | 9.54 |
| AT4G00315.1 | Thale cress | cytosol | 14.45 | 8.62 |
| AT1G55660.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 15.97 | 8.54 |
| AT4G15060.1 | Thale cress | cytosol | 14.07 | 6.86 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:826633 | ProteinID:AEE82878.1 | ArrayExpress:AT4G10410 | EnsemblPlantsGene:AT4G10410 |
| RefSeq:AT4G10410 | TAIR:AT4G10410 | RefSeq:AT4G10410-TAIR-G | EnsemblPlants:AT4G10410.1 | TAIR:AT4G10410.1 | Unigene:At.54255 |
| ProteinID:CAB39794.1 | ProteinID:CAB78164.1 | GO:GO:0005575 | GO:GO:0008150 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| RefSeq:NP_192779.1 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | UniProt:Q9SV81 | SUPFAM:SSF52058 | UniParc:UPI00000A61A2 |
| SEG:seg | : | : | : | : | : |
Description
Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q9SV81]
Coordinates
chr4:-:6448983..6449998
Molecular Weight (calculated)
30337.8 Da
IEP (calculated)
4.700
GRAVY (calculated)
0.106
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLAPTKVAV STSILSKRWE FLWMWLTKLE FGDELYSESE FKSLQCFLDR NLPLHRAPVI ESFRLELSGL YFNPEDIRMW VVVVVSRYVR ELEIYCPEKQ
101: HILPSSLYTC KSLVILKLDG GIILDVPPMV CLPSLRTLEL KGYTCDVDEF VIDTPSLEYF KLEDRNYDSH PCLIENMPKL TVAYVDVRST DLQSLIGSIT
201: SVKYLTISSK AMFGDGFIFN HLEHLTLPVW DDYPWNVLVQ VLKDSPNLRE LSCLSEMNVS SFV
101: HILPSSLYTC KSLVILKLDG GIILDVPPMV CLPSLRTLEL KGYTCDVDEF VIDTPSLEYF KLEDRNYDSH PCLIENMPKL TVAYVDVRST DLQSLIGSIT
201: SVKYLTISSK AMFGDGFIFN HLEHLTLPVW DDYPWNVLVQ VLKDSPNLRE LSCLSEMNVS SFV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.