Factsheet for AT4G10400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G09920.1	Thale cress	cytosol, plasma membrane, plastid	59.66	77.22
AT4G10420.1	Thale cress	extracellular, golgi, nucleus	56.23	71.43
AT4G10410.1	Thale cress	cytosol, plasma membrane, plastid	44.74	69.58
AT3G54910.2	Thale cress	cytosol	52.08	57.1
AT5G38590.2	Thale cress	cytosol	51.59	51.46
AT5G38570.1	Thale cress	cytosol, nucleus, plasma membrane	47.19	50.92
AT5G38580.1	Thale cress	cytosol	20.78	50.6
AT5G38565.1	Thale cress	cytosol, peroxisome, plastid	39.85	46.7
Bra029225.1-P	Field mustard	cytosol	30.56	43.4
CDY64738	Canola	extracellular, nucleus, peroxisome	28.12	36.98
AT4G15075.1	Thale cress	cytosol	14.91	36.31
AT5G56700.2	Thale cress	cytosol	17.85	20.28
AT5G11370.1	Thale cress	cytosol, extracellular	14.18	18.65
AT5G60610.1	Thale cress	cytosol	16.63	17.53
AT5G62970.1	Thale cress	cytosol	18.34	16.7
AT2G26860.2	Thale cress	cytosol	16.14	16.3
AT4G00315.1	Thale cress	cytosol	17.36	16.1
AT1G55660.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	18.58	15.45
AT5G56690.1	Thale cress	endoplasmic reticulum	14.43	14.68
AT1G19410.1	Thale cress	cytosol	15.4	14.48
AT5G56410.1	Thale cress	cytosol	16.63	13.52
AT4G15060.1	Thale cress	cytosol	11.74	8.91

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:826632	UniProt:A1L4Y7	ProteinID:AEE82876.1	ProteinID:AEE82877.1
ProteinID:ANM67792.1	ArrayExpress:AT4G10400	EnsemblPlantsGene:AT4G10400	RefSeq:AT4G10400	TAIR:AT4G10400	RefSeq:AT4G10400-TAIR-G
EnsemblPlants:AT4G10400.1	TAIR:AT4G10400.1	Unigene:At.43398	EMBL:BT011990	EMBL:BT029774	ProteinID:CAB39793.1
ProteinID:CAB78163.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2
RefSeq:NP_001078367.1	RefSeq:NP_001319893.1	RefSeq:NP_192778.2	PFAM:PF00646	PFAM:PF07723	PFAM:PF08387
PO:PO:0000293	PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	UniProt:Q9SV82	SMART:SM00579
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000034F1D7	:	:	:

Description

FBD-associated F-box protein At4g10400 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV82]

Coordinates

chr4:-:6446088..6448022

Molecular Weight (calculated)

47055.5 Da

IEP (calculated)

9.152

GRAVY (calculated)

-0.030

Length

409 amino acids

Sequence
(BLAST)

001: MDRISGLPDE VLVKILSFVP TKVAVSTSIL SKRWEFLWMW LTKLKFGSKR YSESEFKRLQ CFLDRNLPLH RAPVIESFRL VLSDSHFKPE DIRMWVVVAV
101: SRYIRELKIY SSHYGEKQNI LPSSLYTCKS LVILKLDGGV LLDVPRMVCL PSLKTLELKG VRYFKQGSLQ RLLCNCPVLE DLVVNLSHHD NMGKLTVIVP
201: SLQRLSLSTP SSREFVIDTP SLLSFQLVDR NDNSHTFLIE NMPKLREAYI NVPFADIKSL IGSITSVKRL AISSEVGYGE GFIFNHLEEL TLWNKYSSNL
301: LVWFLKNSPN LRELMLVSET DDHENLGMLS WNQPSIVPEC MLSSLQKFTW FKYLGRPQDR DIAVYILKNA CRLRTATIKS DTRLFTKLEM ITELRLSSQA
401: SSTCELNFS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.