Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G62970.1 | Thale cress | cytosol | 55.07 | 61.69 |
| AT5G60610.1 | Thale cress | cytosol | 34.59 | 44.85 |
| AT5G11370.1 | Thale cress | cytosol, extracellular | 27.44 | 44.37 |
| AT5G56700.2 | Thale cress | cytosol | 31.01 | 43.33 |
| AT5G56690.1 | Thale cress | endoplasmic reticulum | 34.59 | 43.28 |
| AT2G26860.2 | Thale cress | cytosol | 33.8 | 41.98 |
| AT4G00315.1 | Thale cress | cytosol | 36.58 | 41.72 |
| AT1G19410.1 | Thale cress | cytosol | 32.01 | 37.01 |
| AT1G55660.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 35.39 | 36.18 |
| AT4G15075.1 | Thale cress | cytosol | 10.74 | 32.14 |
| AT5G38580.1 | Thale cress | cytosol | 10.54 | 31.55 |
| AT4G15060.1 | Thale cress | cytosol | 30.22 | 28.2 |
| AT4G10420.1 | Thale cress | extracellular, golgi, nucleus | 14.31 | 22.36 |
| AT5G38590.2 | Thale cress | cytosol | 15.11 | 18.54 |
| AT4G10410.1 | Thale cress | cytosol, plasma membrane, plastid | 9.54 | 18.25 |
| AT3G54910.2 | Thale cress | cytosol | 13.52 | 18.23 |
| AT5G38570.1 | Thale cress | cytosol, nucleus, plasma membrane | 13.52 | 17.94 |
| AT5G38565.1 | Thale cress | cytosol, peroxisome, plastid | 12.33 | 17.77 |
| AT4G10400.1 | Thale cress | cytosol | 13.52 | 16.63 |
| AT4G09920.1 | Thale cress | cytosol, plasma membrane, plastid | 6.76 | 10.76 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:835742 | ProteinID:AED96761.1 | ArrayExpress:AT5G56410 | EnsemblPlantsGene:AT5G56410 |
| RefSeq:AT5G56410 | TAIR:AT5G56410 | RefSeq:AT5G56410-TAIR-G | EnsemblPlants:AT5G56410.1 | TAIR:AT5G56410.1 | Unigene:At.55582 |
| ProteinID:BAB11269.1 | InterPro:F-box-like_dom_sf | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 |
| RefSeq:NP_200452.1 | PFAM:PF07723 | PFAM:PF08387 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | UniProt:Q9FM90 |
| SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI00000A4966 | : | : |
Description
Putative FBD-associated F-box protein At5g56410 [Source:UniProtKB/Swiss-Prot;Acc:Q9FM90]
Coordinates
chr5:-:22848508..22850331
Molecular Weight (calculated)
58009.9 Da
IEP (calculated)
8.769
GRAVY (calculated)
-0.020
Length
503 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKITGFSDD ELLVKILSFL PTKAAVTTSI LSKQWKFLWM RLPKLEYHDD IKIYILYMRG GSRSRTDSIL LEKSQRMWRF IDKNLPLHSS PVIESLRLTI
101: YNELFQPESI NLWVEIAVSR CVKELSVRFS PFKGKRDALL PTTLYTCKSL VTLKLRENIL VDVPHVFCLP SLKTLHLSHV TYADEESLQR LLSNCFVLED
201: LVVERRVGDN VRNFAVIIPS LLSLSFEILG QCSSEEYVIH TPSLKYFKAR DFGECSTCLI LNMPKLEEVF VSTAGHNIKK LLESVTYVKR LSLFIPDNNA
301: EAFTALYGDV IVFNQLEHLT FIIWEAYCSK LLYWLLIASP KLRNLEFNDQ FSSDGMDTLV FWEQMITSVP QCLLSSLQTF KWLGNGDSIE GKDLATFILR
401: NSCQLKTATI SIGQGQNKLE IEKELLLHQN MDKISGISDD VLLVKILSFR PTKVAVSTSV LSKQWKYLRK RVLKLEYDDT ECKTKPSKSS HKRFRCFVKR
501: FCK
101: YNELFQPESI NLWVEIAVSR CVKELSVRFS PFKGKRDALL PTTLYTCKSL VTLKLRENIL VDVPHVFCLP SLKTLHLSHV TYADEESLQR LLSNCFVLED
201: LVVERRVGDN VRNFAVIIPS LLSLSFEILG QCSSEEYVIH TPSLKYFKAR DFGECSTCLI LNMPKLEEVF VSTAGHNIKK LLESVTYVKR LSLFIPDNNA
301: EAFTALYGDV IVFNQLEHLT FIIWEAYCSK LLYWLLIASP KLRNLEFNDQ FSSDGMDTLV FWEQMITSVP QCLLSSLQTF KWLGNGDSIE GKDLATFILR
401: NSCQLKTATI SIGQGQNKLE IEKELLLHQN MDKISGISDD VLLVKILSFR PTKVAVSTSV LSKQWKYLRK RVLKLEYDDT ECKTKPSKSS HKRFRCFVKR
501: FCK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.