Factsheet for AT1G55660.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

nucleus 1
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G00315.1	Thale cress	cytosol	79.67	88.89
CDY22729	Canola	nucleus	26.02	56.14
AT4G15075.1	Thale cress	cytosol	17.48	51.19
AT5G56700.2	Thale cress	cytosol	34.76	47.5
AT5G56690.1	Thale cress	endoplasmic reticulum	37.4	45.77
AT5G60610.1	Thale cress	cytosol	35.98	45.62
CDY09047	Canola	cytosol	39.84	43.46
AT2G26860.2	Thale cress	cytosol	35.57	43.21
AT5G62970.1	Thale cress	cytosol	37.8	41.43
AT5G38580.1	Thale cress	cytosol	13.01	38.1
AT4G15060.1	Thale cress	cytosol	41.06	37.48
AT5G56410.1	Thale cress	cytosol	36.18	35.39
AT5G11370.1	Thale cress	cytosol, extracellular	22.36	35.37
AT1G19410.1	Thale cress	cytosol	30.69	34.71
AT4G10420.1	Thale cress	extracellular, golgi, nucleus	15.24	23.29
AT5G38570.1	Thale cress	cytosol, nucleus, plasma membrane	16.46	21.37
AT3G54910.2	Thale cress	cytosol	15.85	20.91
AT5G38590.2	Thale cress	cytosol	17.07	20.49
AT5G38565.1	Thale cress	cytosol, peroxisome, plastid	13.62	19.2
AT4G10400.1	Thale cress	cytosol	15.45	18.58
AT4G10410.1	Thale cress	cytosol, plasma membrane, plastid	8.54	15.97
AT4G09920.1	Thale cress	cytosol, plasma membrane, plastid	7.11	11.08

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:842015	ProteinID:AEE33279.1	ArrayExpress:AT1G55660	EnsemblPlantsGene:AT1G55660
RefSeq:AT1G55660	TAIR:AT1G55660	RefSeq:AT1G55660-TAIR-G	EnsemblPlants:AT1G55660.1	TAIR:AT1G55660.1	Unigene:At.52217
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F4I1V3	InterPro:FBD	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628	GO:GO:0009791
GO:GO:0048579	GO:GO:0048587	GO:GO:2000028	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_2	RefSeq:NP_175962.1	PFAM:PF00646	PFAM:PF07723	PFAM:PF08387	PFscan:PS50181
PANTHER:PTHR32212	PANTHER:PTHR32212:SF173	SMART:SM00256	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383
TMHMM:TMhelix	UniParc:UPI000016315C	SEG:seg	:	:	:

Description

FBD, F-box and Leucine Rich Repeat domains containing protein [Source:UniProtKB/TrEMBL;Acc:F4I1V3]

Coordinates

chr1:+:20800694..20802340

Molecular Weight (calculated)

56578.0 Da

IEP (calculated)

7.348

GRAVY (calculated)

-0.045

Length

492 amino acids

Sequence
(BLAST)

001: MFLCVIIPCL CSYLCSLFSW LLGQIPSFLF DKINESWLTS TKRNVEIVKN LMDKISQLPD ELLVKVLSFL STKDAVSTSI LSMRWKSLWM WLPKLEYNFR
101: HYSVSEGQGL ARFITSSLRV HKAPAIESLS LKFRYGAIGS IKPKDIYLWV SLAVHVSNVR ELSLKLFNFA ELPTKLPKSL CKCKSIVILK LKDEILVDVP
201: RKVCLPSLKT LFLGRVTYSD ANSLHRLLSN CPVLEDLVME RDKIDNLGKL SVIVKSLQRL TLKMSRPCHL DGLKMNSPSL KYLKVIDERL ESDSDDESDS
301: DSPRYFYDFE DMPKLEEADF VLTFQNIKKF FGSITSVKRL SLCLGVYTEE SLYHEGLVFN QLEQLKICSC DSDWSILLAR LLKSSPNLRE LEAYVIEDHP
401: NGRTDLPNQW DNQLNCVPTC LLSSLETFRW SEMHGLLQNQ MDVAKYILKN ARCLKSATIF FPTTYAQETR DEMIEELSLS FQGPETCQVF FH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.