Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35372 | Canola | cytosol | 20.18 | 46.94 |
| CDY34607 | Canola | cytosol | 24.12 | 38.73 |
| CDY09047 | Canola | cytosol | 75.88 | 38.36 |
| CDY35566 | Canola | cytosol | 20.18 | 33.58 |
| CDY40226 | Canola | cytosol | 14.91 | 32.69 |
| CDX84780 | Canola | cytosol | 23.68 | 29.67 |
| CDY47798 | Canola | plasma membrane | 53.95 | 28.94 |
| AT4G00315.1 | Thale cress | cytosol | 53.51 | 27.66 |
| CDY41219 | Canola | cytosol | 20.18 | 27.22 |
| AT1G55660.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 56.14 | 26.02 |
| CDY40230 | Canola | cytosol | 19.74 | 24.19 |
| CDY17463 | Canola | cytosol | 31.58 | 24.16 |
| CDY38511 | Canola | cytosol | 42.98 | 23.9 |
| CDY55715 | Canola | cytosol, nucleus, plasma membrane | 42.98 | 23.9 |
| CDY53464 | Canola | cytosol | 41.67 | 23.28 |
| CDY52958 | Canola | cytosol | 19.74 | 22.17 |
| CDY72604 | Canola | extracellular | 28.51 | 22.11 |
| CDX78281 | Canola | cytosol | 29.39 | 20.94 |
| CDY66257 | Canola | mitochondrion | 39.47 | 20.93 |
| CDX84569 | Canola | mitochondrion | 24.12 | 20.83 |
| CDX91627 | Canola | cytosol | 29.39 | 20.62 |
| CDY64738 | Canola | extracellular, nucleus, peroxisome | 28.07 | 20.58 |
| CDY32785 | Canola | cytosol | 32.89 | 20.33 |
| CDY27080 | Canola | cytosol | 29.82 | 20.0 |
| CDY67485 | Canola | cytosol | 31.58 | 19.89 |
| CDX73428 | Canola | cytosol, extracellular, plasma membrane | 27.63 | 19.69 |
| CDY41221 | Canola | cytosol | 27.19 | 18.96 |
| CDY23937 | Canola | mitochondrion | 27.63 | 16.28 |
| CDX73430 | Canola | extracellular, vacuole | 28.95 | 15.9 |
| CDY40225 | Canola | endoplasmic reticulum, extracellular | 27.19 | 15.86 |
| CDY16725 | Canola | cytosol, extracellular, nucleus | 17.54 | 15.62 |
| CDX78279 | Canola | cytosol | 26.32 | 15.58 |
| CDX73429 | Canola | mitochondrion | 8.33 | 15.45 |
| CDX78283 | Canola | extracellular, plasma membrane | 28.07 | 15.42 |
| CDX96200 | Canola | extracellular, plasma membrane | 28.07 | 15.42 |
| CDX73431 | Canola | endoplasmic reticulum, plasma membrane | 28.07 | 15.38 |
| CDY22940 | Canola | plasma membrane | 57.02 | 15.37 |
| CDY40231 | Canola | cytosol | 28.07 | 15.24 |
| CDY41224 | Canola | cytosol, plasma membrane | 27.19 | 15.01 |
| CDX87839 | Canola | cytosol, endoplasmic reticulum, plastid | 26.32 | 14.15 |
| CDX74515 | Canola | cytosol | 28.51 | 13.86 |
| CDX73432 | Canola | extracellular, plasma membrane | 25.0 | 13.38 |
| CDY40228 | Canola | cytosol, extracellular, nucleus | 7.02 | 12.9 |
| CDX79668 | Canola | cytosol | 19.74 | 12.75 |
| CDY01651 | Canola | mitochondrion | 18.86 | 12.72 |
| CDY48142 | Canola | cytosol | 10.96 | 12.69 |
| CDX78280 | Canola | extracellular, golgi, mitochondrion, plastid | 24.12 | 11.9 |
| CDY41220 | Canola | cytosol | 1.32 | 1.89 |
Protein Annotations
| EnsemblPlants:CDY22729 | EnsemblPlantsGene:GSBRNA2T00021032001 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR32212 |
| PANTHER:PTHR32212:SF173 | ProteinID:CDY22729 | ProteinID:CDY22729.1 | SEG:seg | SUPFAM:SSF52047 | UniParc:UPI0004EE258A |
| UniProt:A0A078GBK4 | MapMan:35.1 | : | : | : | : |
Description
BnaA08g05590DBnaA08g05590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBK4]
Coordinates
chrLK032135:+:93140..94005
Molecular Weight (calculated)
26636.7 Da
IEP (calculated)
5.154
GRAVY (calculated)
-0.326
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MVYSNEKSLH QLLSHCPVLE DLVLERNDED NNSPFTLSVI VPSLQRLTLQ RLTLKISRGY HFEGLVINTP SLMYFKILDY LEEYARDDNS NYSYYFEDTP
101: KLEEADIEST YPDINKFVRS IRSVKRLSLC IRVNADEEAL YHEGIVFDQL QHLKLCSCGP NWSKLLVRLL KDSPLLRDLE IYLNEDHTSS RVDAPVSWQN
201: QLDCVPTCLL ASLETFKWTV VYVDHKKR
101: KLEEADIEST YPDINKFVRS IRSVKRLSLC IRVNADEEAL YHEGIVFDQL QHLKLCSCGP NWSKLLVRLL KDSPLLRDLE IYLNEDHTSS RVDAPVSWQN
201: QLDCVPTCLL ASLETFKWTV VYVDHKKR
001: MFLCVIIPCL CSYLCSLFSW LLGQIPSFLF DKINESWLTS TKRNVEIVKN LMDKISQLPD ELLVKVLSFL STKDAVSTSI LSMRWKSLWM WLPKLEYNFR
101: HYSVSEGQGL ARFITSSLRV HKAPAIESLS LKFRYGAIGS IKPKDIYLWV SLAVHVSNVR ELSLKLFNFA ELPTKLPKSL CKCKSIVILK LKDEILVDVP
201: RKVCLPSLKT LFLGRVTYSD ANSLHRLLSN CPVLEDLVME RDKIDNLGKL SVIVKSLQRL TLKMSRPCHL DGLKMNSPSL KYLKVIDERL ESDSDDESDS
301: DSPRYFYDFE DMPKLEEADF VLTFQNIKKF FGSITSVKRL SLCLGVYTEE SLYHEGLVFN QLEQLKICSC DSDWSILLAR LLKSSPNLRE LEAYVIEDHP
401: NGRTDLPNQW DNQLNCVPTC LLSSLETFRW SEMHGLLQNQ MDVAKYILKN ARCLKSATIF FPTTYAQETR DEMIEELSLS FQGPETCQVF FH
101: HYSVSEGQGL ARFITSSLRV HKAPAIESLS LKFRYGAIGS IKPKDIYLWV SLAVHVSNVR ELSLKLFNFA ELPTKLPKSL CKCKSIVILK LKDEILVDVP
201: RKVCLPSLKT LFLGRVTYSD ANSLHRLLSN CPVLEDLVME RDKIDNLGKL SVIVKSLQRL TLKMSRPCHL DGLKMNSPSL KYLKVIDERL ESDSDDESDS
301: DSPRYFYDFE DMPKLEEADF VLTFQNIKKF FGSITSVKRL SLCLGVYTEE SLYHEGLVFN QLEQLKICSC DSDWSILLAR LLKSSPNLRE LEAYVIEDHP
401: NGRTDLPNQW DNQLNCVPTC LLSSLETFRW SEMHGLLQNQ MDVAKYILKN ARCLKSATIF FPTTYAQETR DEMIEELSLS FQGPETCQVF FH
Arabidopsis Description
FBD, F-box and Leucine Rich Repeat domains containing protein [Source:UniProtKB/TrEMBL;Acc:F4I1V3]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.