Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72604 | Canola | extracellular | 86.25 | 93.88 |
| CDY41219 | Canola | cytosol | 38.44 | 72.78 |
| CDY41221 | Canola | cytosol | 70.94 | 69.42 |
| CDX78281 | Canola | cytosol | 66.25 | 66.25 |
| CDY40228 | Canola | cytosol, extracellular, nucleus | 25.31 | 65.32 |
| CDY40230 | Canola | cytosol | 37.81 | 65.05 |
| CDY41224 | Canola | cytosol, plasma membrane | 71.88 | 55.69 |
| CDX73429 | Canola | mitochondrion | 20.31 | 52.85 |
| CDX78279 | Canola | cytosol | 63.44 | 52.73 |
| CDX84569 | Canola | mitochondrion | 43.44 | 52.65 |
| CDX84780 | Canola | cytosol | 29.69 | 52.2 |
| CDY40226 | Canola | cytosol | 16.88 | 51.92 |
| AT3G54910.2 | Thale cress | cytosol | 60.0 | 51.47 |
| CDX73430 | Canola | extracellular, vacuole | 65.62 | 50.6 |
| CDX78283 | Canola | extracellular, plasma membrane | 65.31 | 50.36 |
| CDX96200 | Canola | extracellular, plasma membrane | 65.31 | 50.36 |
| CDY40231 | Canola | cytosol | 65.94 | 50.24 |
| CDX73431 | Canola | endoplasmic reticulum, plasma membrane | 64.69 | 49.76 |
| CDY40225 | Canola | endoplasmic reticulum, extracellular | 60.62 | 49.62 |
| CDY32785 | Canola | cytosol | 49.69 | 43.09 |
| CDY67485 | Canola | cytosol | 47.81 | 42.27 |
| CDY48142 | Canola | cytosol | 25.62 | 41.62 |
| CDX78280 | Canola | extracellular, golgi, mitochondrion, plastid | 59.38 | 41.13 |
| CDY16725 | Canola | cytosol, extracellular, nucleus | 32.81 | 41.02 |
| CDY41220 | Canola | cytosol | 20.31 | 40.88 |
| CDX79668 | Canola | cytosol | 44.06 | 39.94 |
| CDY17463 | Canola | cytosol | 36.88 | 39.6 |
| CDX73432 | Canola | extracellular, plasma membrane | 52.19 | 39.2 |
| CDY52958 | Canola | cytosol | 24.69 | 38.92 |
| CDY35566 | Canola | cytosol | 16.56 | 38.69 |
| CDY34607 | Canola | cytosol | 16.25 | 36.62 |
| CDY23937 | Canola | mitochondrion | 42.5 | 35.14 |
| CDY35372 | Canola | cytosol | 10.0 | 32.65 |
| CDX74515 | Canola | cytosol | 43.44 | 29.64 |
| CDX87839 | Canola | cytosol, endoplasmic reticulum, plastid | 38.75 | 29.25 |
| CDY22729 | Canola | nucleus | 19.69 | 27.63 |
| CDY64738 | Canola | extracellular, nucleus, peroxisome | 25.94 | 26.69 |
| CDY01651 | Canola | mitochondrion | 27.81 | 26.33 |
| CDY53464 | Canola | cytosol | 22.81 | 17.89 |
| CDY55715 | Canola | cytosol, nucleus, plasma membrane | 22.19 | 17.32 |
| CDY47798 | Canola | plasma membrane | 22.5 | 16.94 |
| CDY38511 | Canola | cytosol | 21.25 | 16.59 |
| CDY09047 | Canola | cytosol | 23.12 | 16.41 |
| CDY66257 | Canola | mitochondrion | 20.62 | 15.35 |
| CDY22940 | Canola | plasma membrane | 37.19 | 14.07 |
| CDX91627 | Canola | cytosol | 12.5 | 12.31 |
| CDY27080 | Canola | cytosol | 12.19 | 11.47 |
Protein Annotations
| EnsemblPlants:CDX73428 | EnsemblPlantsGene:GSBRNA2T00108925001 | Gene3D:3.80.10.10 | InterPro:FBD | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_2 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | PFAM:PF07723 | PFAM:PF08387 | ProteinID:CDX73428 |
| ProteinID:CDX73428.1 | SMART:SM00579 | SUPFAM:SSF52047 | UniParc:UPI0004EF373C | MapMan:35.1 | : |
Description
BnaC08g25750D
Coordinates
chrLK031799:+:309483..310598
Molecular Weight (calculated)
36377.4 Da
IEP (calculated)
5.209
GRAVY (calculated)
0.092
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVLTAVSHC LRELKIVYES DSAELDILPS NLFTCKSLVF LKLAGDIILD VPRMVSLPSL KTLKLQKIVC CNGETLQRLL SNCPILEDLM VDLHDYDYTG
101: KLSIVVPSLQ SLSLFIPYRR EIDGFVIETP SLKYFKLRDD SWHDHYSLIG NMPFLTEAYV DVDPPHISSV IRSITSVKRL AICSQDMLDE GFVFNQLEHL
201: EVCLCTLLFS NQLVRLLNAS SKLKRLDMSL TDGHVPRGMD DWNRPSTVPE CLLSSLQSLN WLEYTGEPQE RDIVVYILKH ALHLKTATIT LTESDFTKLD
301: MIKELARSSR ASTTCELMFD
101: KLSIVVPSLQ SLSLFIPYRR EIDGFVIETP SLKYFKLRDD SWHDHYSLIG NMPFLTEAYV DVDPPHISSV IRSITSVKRL AICSQDMLDE GFVFNQLEHL
201: EVCLCTLLFS NQLVRLLNAS SKLKRLDMSL TDGHVPRGMD DWNRPSTVPE CLLSSLQSLN WLEYTGEPQE RDIVVYILKH ALHLKTATIT LTESDFTKLD
301: MIKELARSSR ASTTCELMFD
001: MWLPKLKYGH RDSSECKRLE CFLDKNLPLH RAPVIESFRL YLIDSKCTPE NIKMWVVIAV SHCLRELEVI YSSYPEKPNI LPSNLYTCKS LVILELCGEI
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD
101: RLDVPRMAFL PSLKTLQLHS VRYLNEDSLH RLLSNCPVLE DLLVDLLLSD SMEKLTVVVP SLQILSLFIP HSYEIDGIVI ETPSLKYFKL IDHNSKSHYC
201: LVKNMPNLIE ADIDVELHSI KSLIGSITSV KRLSICSQAM YDGGFVFNQL KHLKLCRCKG HSSDLLVRLL KDSSNLQALD LSEMDYHENH DILYWHQPST
301: VPECMLLSLQ TLNLSAYRGT PEERDLAVYF LKNAVHLKTT TIKSCVFDDE RFDMLKELAL SSRASTTCQL VFD
Arabidopsis Description
At3g54910 [Source:UniProtKB/TrEMBL;Acc:Q501B7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.