Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67485 | Canola | cytosol | 93.96 | 77.35 |
| CDY32785 | Canola | cytosol | 92.95 | 75.07 |
| CDY41219 | Canola | cytosol | 31.54 | 55.62 |
| CDX84780 | Canola | cytosol | 30.54 | 50.0 |
| CDY40230 | Canola | cytosol | 29.87 | 47.85 |
| CDY35372 | Canola | cytosol | 15.1 | 45.92 |
| CDY35566 | Canola | cytosol | 20.47 | 44.53 |
| CDX73429 | Canola | mitochondrion | 18.12 | 43.9 |
| CDY40225 | Canola | endoplasmic reticulum, extracellular | 56.71 | 43.22 |
| CDX78283 | Canola | extracellular, plasma membrane | 59.73 | 42.89 |
| CDX96200 | Canola | extracellular, plasma membrane | 59.73 | 42.89 |
| CDY40226 | Canola | cytosol | 14.43 | 41.35 |
| CDX73430 | Canola | extracellular, vacuole | 57.05 | 40.96 |
| CDX73431 | Canola | endoplasmic reticulum, plasma membrane | 57.05 | 40.87 |
| CDY34607 | Canola | cytosol | 19.46 | 40.85 |
| CDY40231 | Canola | cytosol | 57.38 | 40.71 |
| CDY72604 | Canola | extracellular | 39.93 | 40.48 |
| CDX79668 | Canola | cytosol | 47.65 | 40.23 |
| CDY41224 | Canola | cytosol, plasma membrane | 55.7 | 40.19 |
| CDX84569 | Canola | mitochondrion | 35.23 | 39.77 |
| CDY23937 | Canola | mitochondrion | 51.01 | 39.28 |
| CDX73428 | Canola | cytosol, extracellular, plasma membrane | 39.6 | 36.88 |
| CDX78281 | Canola | cytosol | 39.6 | 36.88 |
| CDX78279 | Canola | cytosol | 46.98 | 36.36 |
| CDX78280 | Canola | extracellular, golgi, mitochondrion, plastid | 56.38 | 36.36 |
| CDY01651 | Canola | mitochondrion | 40.94 | 36.09 |
| CDY41221 | Canola | cytosol | 39.6 | 36.09 |
| CDX74515 | Canola | cytosol | 52.35 | 33.26 |
| CDX87839 | Canola | cytosol, endoplasmic reticulum, plastid | 46.98 | 33.02 |
| CDY52958 | Canola | cytosol | 21.81 | 32.02 |
| CDY22729 | Canola | nucleus | 24.16 | 31.58 |
| Bra002819.1-P | Field mustard | extracellular, plasma membrane | 77.52 | 30.35 |
| CDY64738 | Canola | extracellular, nucleus, peroxisome | 31.54 | 30.23 |
| CDX73432 | Canola | extracellular, plasma membrane | 40.6 | 28.4 |
| CDY16725 | Canola | cytosol, extracellular, nucleus | 19.13 | 22.27 |
| CDY41220 | Canola | cytosol | 11.41 | 21.38 |
| CDY48142 | Canola | cytosol | 13.42 | 20.3 |
| CDY09047 | Canola | cytosol | 29.53 | 19.51 |
| CDY53464 | Canola | cytosol | 26.51 | 19.36 |
| CDY47798 | Canola | plasma membrane | 27.52 | 19.29 |
| CDY55715 | Canola | cytosol, nucleus, plasma membrane | 25.84 | 18.78 |
| CDY38511 | Canola | cytosol | 25.5 | 18.54 |
| CDY40228 | Canola | cytosol, extracellular, nucleus | 6.71 | 16.13 |
| CDY66257 | Canola | mitochondrion | 23.15 | 16.05 |
| CDX91627 | Canola | cytosol | 16.11 | 14.77 |
| CDY27080 | Canola | cytosol | 16.78 | 14.71 |
| CDY22940 | Canola | plasma membrane | 30.54 | 10.76 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | UniProt:A0A078FYP8 | EnsemblPlants:CDY17463 | ProteinID:CDY17463 | ProteinID:CDY17463.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00095633001 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PFAM:PF00646 | PFAM:PF08387 |
| PFscan:PS50181 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF173 | SMART:SM00256 | SMART:SM00579 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | UniParc:UPI0004EEA70D | : | : | : | : |
Description
BnaC09g20740DBnaC09g20740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYP8]
Coordinates
chrLK032073:-:721703..723934
Molecular Weight (calculated)
34806.5 Da
IEP (calculated)
6.779
GRAVY (calculated)
-0.079
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKVSRLPDE LLVKVLTFLP TKEAVSTSIL SKRWEHLWMW LPKLEYDDQH YSESERKRLR CFIVRSLPLH KAHVIESLRL KLSNSHYFKP QTLQLQEYGI
101: DGLVIKTPSL KYFKFRIHSN ISHYCLVEHM PNLIEAYIDV EFPNIKSLIE SITSVKRLEI CLEVLYEEGI VFSQLEHLKL CRCKDCTSNL LVRLLKDSPN
201: LRVLDLYEMI DHYYCGIIPW NPPSTVPACM LSSLQIFHWS AFSGVPGERD LAIYMLKNAS HLKTATIWSD ECDIPELEML KELAFSSRAS TTCEFMFD
101: DGLVIKTPSL KYFKFRIHSN ISHYCLVEHM PNLIEAYIDV EFPNIKSLIE SITSVKRLEI CLEVLYEEGI VFSQLEHLKL CRCKDCTSNL LVRLLKDSPN
201: LRVLDLYEMI DHYYCGIIPW NPPSTVPACM LSSLQIFHWS AFSGVPGERD LAIYMLKNAS HLKTATIWSD ECDIPELEML KELAFSSRAS TTCEFMFD
001: MDKINGLPDD LLVKILSYVP TDIAVSTSIL SKRWEFLWMW LPNLDYTSRW CRKPGDVGLR DFIHKNLPLH RAPVIESLRF HSNSPDIKPE DIRRWIEIAV
101: SRHVHDLDID HFSENENIFL SSFFACKSLV TLKLRSVTLR DIPSMDGYGD GFVFNQLEHL TLCVCRGDSP SLLGQLLKDS PNLRILEISV MEDHVDDVGI
201: SLDGWNQPSS VPECLLSSLQ IFKWPQYLGR PEDRDIAVYI LKNARHLKKT TILADRCERF VTQRRMIKEL LQALPARIC
101: SRHVHDLDID HFSENENIFL SSFFACKSLV TLKLRSVTLR DIPSMDGYGD GFVFNQLEHL TLCVCRGDSP SLLGQLLKDS PNLRILEISV MEDHVDDVGI
201: SLDGWNQPSS VPECLLSSLQ IFKWPQYLGR PEDRDIAVYI LKNARHLKKT TILADRCERF VTQRRMIKEL LQALPARIC
Arabidopsis Description
FBD-associated F-box protein At5g38590 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFW2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.